Locus 5963

Sequence ID 2R_DroMel_CAF1
Location 18,782,917 – 18,783,021
Length 104
Max. P 0.815803
window9565

overview

Window 5

Location 18,782,917 – 18,783,021
Length 104
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.70
Mean single sequence MFE -17.85
Consensus MFE -10.94
Energy contribution -12.03
Covariance contribution 1.09
Combinations/Pair 1.21
Mean z-score -2.52
Structure conservation index 0.61
SVM decision value 0.66
SVM RNA-class probability 0.815803
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18782917 104 - 20766785
-ACUCGCAAACAUUGCAAAUUACCACCCACCGCCACGUAAAUCACC-AUAACCAUAUUUCAAUCGCUUCACUGCGAUCUGAAUCCCCCAGCGAUUUGUG---CAACUAU
-....(((...(((((...((((.............))))......-..........(((((((((......))))).)))).......)))))...))---)...... ( -17.52)
>DroSec_CAF1 2842 104 - 1
-ACUCGCAAACAUUGCAAAUUACCACCCACCGCAACGUAAAUCAUC-AUAACCAUAUUUCAAUCGCUCCACAGCGAUCUGAAUCCCCCAGCGAUUUGUG---CAACUAU
-....(((...(((((...((((.............))))......-..........((((((((((....)))))).)))).......)))))...))---)...... ( -17.52)
>DroSim_CAF1 2844 104 - 1
-ACUCGCAAACAUGGCAAAUUACCACCCACCGCCACGUAAAUCAUC-AUAACCAUAUUUCAGUCGCUCCACAGCGAUCUGAAUCCCCCAGCGAUUUGUG---CAACUAU
-..((((..((.((((...............)))).))........-..........((((((((((....))))).))))).......))))......---....... ( -21.66)
>DroEre_CAF1 2858 104 - 1
-ACUCGCAAACAUGGCAAAUUACCACCCACAGCCACGUAAAUCACC-AUAACCAUAUUUCAAUCGCUAGCCAGCGAUCCGAAUCCCCCAGCGAUUUGUG---CAACUAU
-..((((..((.((((...............)))).))........-..........(((.((((((....))))))..))).......))))......---....... ( -17.86)
>DroYak_CAF1 2878 104 - 1
-ACUCGCAAACAUGGCAAAUUACCACCCACAGCCACGUAAAUCACC-AUAACCAUAUUUCAAUCGCUCCCCAGCGAUCUGAAUCCGCCAGCGAUUUGUG---CAACUAU
-..((((..((.((((...............)))).))........-..........((((((((((....)))))).)))).......))))......---....... ( -19.36)
>DroPer_CAF1 48895 89 - 1
GAGCCACAAACAUU--------------ACCGCAUCGUAAAUCAUCAAUAACUAUAUUUCAAUCAGUUC------GUGUGGAUCCCCCACAGACACGAGGCCAAGCUAU
(.(((.......((--------------((......)))).........................((..------(((.((....)))))..))....))))....... ( -13.20)
>consensus
_ACUCGCAAACAUGGCAAAUUACCACCCACCGCCACGUAAAUCACC_AUAACCAUAUUUCAAUCGCUCCACAGCGAUCUGAAUCCCCCAGCGAUUUGUG___CAACUAU
...((((..((.((((...............)))).))...................(((((((((......))))).)))).......))))................ (-10.94 = -12.03 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:09 2006