Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,777,711 – 18,777,803 |
Length | 92 |
Max. P | 0.997860 |
Location | 18,777,711 – 18,777,803 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 90.71 |
Mean single sequence MFE | -19.18 |
Consensus MFE | -16.78 |
Energy contribution | -17.14 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -2.31 |
Structure conservation index | 0.87 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18777711 92 - 20766785 CCAAUCAAAACCCAAAACCCACGAGGACCCAUUCACUGACCGCUGGCAGCUGCUAAAAGCGCUAGCGAGUAUUAAAAACUCGUUUCGACUAA ....................(((((((.....))....(((((((((.(((......)))))))))).))........)))))......... ( -21.70) >DroSec_CAF1 140445 86 - 1 GCAAUC------CCUAACCCACGACGACCCACUCACUGACCGCUGGCAGCUGCUAAAAGGGCUAGCGAGUAUUAAAAACUCGUUUCGACUAA ......------............(((..(...........((((((..((......)).))))))((((.......)))))..)))..... ( -17.80) >DroSim_CAF1 142749 86 - 1 CCAAUC------CCUAACCCACGACGACCCACUCACUGACCGCUGGCAGCUGCUAAAAGCGCUAGCAAGUAUUAAAAACUCGUUUCGACUAA ......------..........(((((.......(((....((((((.(((......))))))))).))).........)))))........ ( -16.29) >DroEre_CAF1 141395 83 - 1 CCAAUC------CCUAACCCACGAC-C--CACUCACUGACCGCUGGCAGCUGCUAAAAGCGCCAGCGAGUAUUAAAAACUCGUUUCGACUAA ......------.........(((.-.--(...........((((((.(((......)))))))))((((.......)))))..)))..... ( -22.90) >DroYak_CAF1 142942 85 - 1 CCAAUC------CCUAACCCACGAC-CCCCACUCACUGACCGCUGGCAGCUGCUAAAAGCGCCAACGAGUAUUAAAAACUCGUUUCGACUAA ......------.........(((.-..................(((.(((......))))))(((((((.......))))))))))..... ( -17.20) >consensus CCAAUC______CCUAACCCACGACGACCCACUCACUGACCGCUGGCAGCUGCUAAAAGCGCUAGCGAGUAUUAAAAACUCGUUUCGACUAA .....................(((.................((((((.(((......)))))))))((((.......))))...)))..... (-16.78 = -17.14 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:04 2006