Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,034,749 – 3,034,885 |
Length | 136 |
Max. P | 0.864816 |
Location | 3,034,749 – 3,034,869 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -40.25 |
Consensus MFE | -27.21 |
Energy contribution | -27.05 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.37 |
Mean z-score | -2.08 |
Structure conservation index | 0.68 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3034749 120 + 20766785 GCAAUUGCCUGCAAGAAGAUCUGCUCCAUCCGCGAACAGUUCCUAAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAAUGCCUGCUGCACGUGCAGCAUUGUGACGCACUUGACC .(((.(((..(((........)))......(((((.(((..((....)).)))......((((.(((((........))))).))))((((((....)))))))))))..))).)))... ( -35.80) >DroVir_CAF1 7490 120 + 1 GCAACGGCUUGCAGAAAGAUCUGCUCCAGUCGUGAACAGUUCUUGAUAGCCUGCACCUUUGCACUGGCUAUCAUCUCGGCCAGCGCCUGCUGCACAUGCAGCAUAGUCACACACUUGGCU ((...((((.(((((....)))))...))))((((........((((((((((((....))))..))))))))....(((....)))((((((....))))))...)))).......)). ( -43.90) >DroGri_CAF1 8409 120 + 1 GCAACGGCUUGCAGAAACAUCUGCUCCAGCCGCGAACAGUUCUUGAUGGCCUGCACUUUGGCGCUGGCAAUCAUUUCGGCCAGCGCUUGCUGCACAUGCAGCAUAUUCACGCACUUUACU .....((((.(((((....)))))...))))(((..(((..(.....)..)))......(((((((((..........)))))))))((((((....))))))......)))........ ( -46.70) >DroWil_CAF1 7903 116 + 1 GCCACUGCUUGGAGGAAAAUCUGCUCGAGUCGUGAACAAUUCUUGAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAGAGCCUGUUGGACAUGCAACAUUGUGACACAAUC---- ..(((.((((((.((.....))..)))))).))).(((((..((((((.((.(((....(((.((((((........)))))).)))))).)).))).))).))))).........---- ( -34.40) >DroMoj_CAF1 8841 120 + 1 GCAACGGCCUGCAGAAAAAUUUGCUCCAGACGCGAACAGUUUUUGAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAGCGCCUGCUGCACAUGCAGCAUCGUCACACACUUCAUU (((..((((..((((((..(((((.......)))))...))))))..))))))).....(((.((((((........)))))).)))((((((....))))))................. ( -43.70) >DroAna_CAF1 7961 120 + 1 GCCACCGCCUGUAGGAAGAUCUGCUCCAAGCGUGAACAGUUCUUAAUAGCUUGCACCUUGGCACUGGCAAUCAUUUCAGCCAGGGCCUGCUGUACAUGCAGCAUGGUCACGCACUUGACA ((((.....((((((((((.(((.(((....).)).))).)))).....))))))...)))).(((((..........)))))((((((((((....)))))).))))............ ( -37.00) >consensus GCAACGGCCUGCAGAAAGAUCUGCUCCAGCCGCGAACAGUUCUUGAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAGCGCCUGCUGCACAUGCAGCAUAGUCACACACUUGACU ((....))..(((((....))))).......(((.........(((((((((((......)))..))))))))....(((....)))((((((....))))))......)))........ (-27.21 = -27.05 + -0.16)
Location | 3,034,749 – 3,034,869 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.61 |
Mean single sequence MFE | -43.50 |
Consensus MFE | -34.63 |
Energy contribution | -34.75 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.33 |
Mean z-score | -1.67 |
Structure conservation index | 0.80 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3034749 120 - 20766785 GGUCAAGUGCGUCACAAUGCUGCACGUGCAGCAGGCAUUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUUAGGAACUGUUCGCGGAUGGAGCAGAUCUUCUUGCAGGCAAUUGC ((((...(((..(....((((((....))))))(((((((((..........)))))))))..)..)))))))...((((.((((((.......)))))).))))...((((....)))) ( -47.00) >DroVir_CAF1 7490 120 - 1 AGCCAAGUGUGUGACUAUGCUGCAUGUGCAGCAGGCGCUGGCCGAGAUGAUAGCCAGUGCAAAGGUGCAGGCUAUCAAGAACUGUUCACGACUGGAGCAGAUCUUUCUGCAAGCCGUUGC .(((.(((.....))).((((((....)))))))))(((.((.((((((((((((.(..(....)..).)))))))).((.((((((.......)))))).)))))).)).)))...... ( -47.90) >DroGri_CAF1 8409 120 - 1 AGUAAAGUGCGUGAAUAUGCUGCAUGUGCAGCAAGCGCUGGCCGAAAUGAUUGCCAGCGCCAAAGUGCAGGCCAUCAAGAACUGUUCGCGGCUGGAGCAGAUGUUUCUGCAAGCCGUUGC ........(((((((((((((((....)))))).((((((((..........))))))))......................)))))))((((...(((((....))))).))))...)) ( -47.00) >DroWil_CAF1 7903 116 - 1 ----GAUUGUGUCACAAUGUUGCAUGUCCAACAGGCUCUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUCAAGAAUUGUUCACGACUCGAGCAGAUUUUCCUCCAAGCAGUGGC ----......(((((..(((((......))))).(((.(((..((((((((.(((.(..(....)..).))).))))....((((((.......))))))..))))..)))))).))))) ( -34.40) >DroMoj_CAF1 8841 120 - 1 AAUGAAGUGUGUGACGAUGCUGCAUGUGCAGCAGGCGCUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUCAAAAACUGUUCGCGUCUGGAGCAAAUUUUUCUGCAGGCCGUUGC ..........(..(((.((((((....))))))(((((((((..........)))))))))....((((((.....((((..(((((.......)))))..))))))))))...)))..) ( -42.80) >DroAna_CAF1 7961 120 - 1 UGUCAAGUGCGUGACCAUGCUGCAUGUACAGCAGGCCCUGGCUGAAAUGAUUGCCAGUGCCAAGGUGCAAGCUAUUAAGAACUGUUCACGCUUGGAGCAGAUCUUCCUACAGGCGGUGGC .((((..(((.(((((.(((((......)))))(((.(((((..........))))).)))..)))..........((((.((((((.......)))))).))))....)).))).)))) ( -41.90) >consensus AGUCAAGUGCGUGACAAUGCUGCAUGUGCAGCAGGCGCUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUCAAGAACUGUUCACGACUGGAGCAGAUCUUCCUGCAAGCCGUUGC ........((.......((((((....))))))(((((((((..........)))))))))....((((((.....((((.((((((.......)))))).)))))))))).))...... (-34.63 = -34.75 + 0.12)
Location | 3,034,789 – 3,034,885 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -24.38 |
Energy contribution | -24.63 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.25 |
Mean z-score | -2.32 |
Structure conservation index | 0.72 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825404 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3034789 96 + 20766785 UCCUAAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAAUGCCUGCUGCACGUGCAGCAUUGUGACGCACUUGACCGC---------------AGCCGUAUCAGCAA .....(((((.(((.....((((.(((((........))))).))))((((((....)))))).................))---------------))))))........ ( -34.60) >DroSec_CAF1 8424 96 + 1 UCCUAAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAAUGCCUGCUGCACGUGCAGCAUUGUGACGCACUUGACCGC---------------AGCCGUGUCAGCAA .....(((((.(((.....((((.(((((........))))).))))((((((....)))))).................))---------------))))))........ ( -34.60) >DroSim_CAF1 8433 96 + 1 UCCUGAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAAUGCCUGCUGCACGUGCAGCAUUGUGACGCACUUGACCGC---------------AGCCGUGUCAGCAA ..((((((((.(((.....((((.(((((........))))).))))((((((....)))))).................))---------------))))..)))))... ( -36.70) >DroEre_CAF1 8874 96 + 1 UUCUAAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCAGCCAAUGCCUGCUGUACGUGAAGCAUUGUUACGCACUUCACCGC---------------AGCCAUAUCAGCAA .....(((((.(((.....((((.(((((........))))).))))........((((((...((.....)))))))).))---------------))))))........ ( -31.30) >DroMoj_CAF1 8881 111 + 1 UUUUGAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAGCGCCUGCUGCACAUGCAGCAUCGUCACACACUUCAUUCCACCCGGCUGUGCGUCAGCUGUGUCAGCGA ...((((((..........(((.((((((........)))))).)))((((((....)))))))))))).............((.((((((.....)))))).))...... ( -38.80) >DroPer_CAF1 11412 96 + 1 UCUUUAUGGCCUGUACCUUUGCGCUCGCUAUCAUCUCGCCAAGCGCCUGCUGCACGUGCAGCAUUGUCACACACUUAUCACG---------------AGCAGUGUCAGCUA ......((((((((......(((((.((.........))..))))).((((((....))))))...................---------------.)))).)))).... ( -25.80) >consensus UCCUAAUGGCCUGCACCUUGGCACUGGCUAUCAUCUCGGCCAAUGCCUGCUGCACGUGCAGCAUUGUGACGCACUUGACCGC_______________AGCCGUGUCAGCAA .....(((((.........((((.(((((........))))).))))((((((....))))))...................................)))))........ (-24.38 = -24.63 + 0.25)
Location | 3,034,789 – 3,034,885 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -38.57 |
Consensus MFE | -29.50 |
Energy contribution | -28.87 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.32 |
Mean z-score | -2.35 |
Structure conservation index | 0.76 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864816 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3034789 96 - 20766785 UUGCUGAUACGGCU---------------GCGGUCAAGUGCGUCACAAUGCUGCACGUGCAGCAGGCAUUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUUAGGA ..((((...)))).---------------..((((...(((..(....((((((....))))))(((((((((..........)))))))))..)..)))))))....... ( -39.10) >DroSec_CAF1 8424 96 - 1 UUGCUGACACGGCU---------------GCGGUCAAGUGCGUCACAAUGCUGCACGUGCAGCAGGCAUUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUUAGGA ..((((...)))).---------------..((((...(((..(....((((((....))))))(((((((((..........)))))))))..)..)))))))....... ( -39.10) >DroSim_CAF1 8433 96 - 1 UUGCUGACACGGCU---------------GCGGUCAAGUGCGUCACAAUGCUGCACGUGCAGCAGGCAUUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUCAGGA ...((((...((((---------------((......))((..(....((((((....))))))(((((((((..........)))))))))..)..)).)))).)))).. ( -39.80) >DroEre_CAF1 8874 96 - 1 UUGCUGAUAUGGCU---------------GCGGUGAAGUGCGUAACAAUGCUUCACGUACAGCAGGCAUUGGCUGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUUAGAA ...((((..(((((---------------...(((((((..........)))))))((((....(((((((((((......)))))))))))...)))).))))))))).. ( -40.00) >DroMoj_CAF1 8881 111 - 1 UCGCUGACACAGCUGACGCACAGCCGGGUGGAAUGAAGUGUGUGACGAUGCUGCAUGUGCAGCAGGCGCUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUCAAAA .......(((.((((.....))))...)))...(((.((.(((..(..((((((....))))))(((((((((..........)))))))))..)..))).))..)))... ( -42.00) >DroPer_CAF1 11412 96 - 1 UAGCUGACACUGCU---------------CGUGAUAAGUGUGUGACAAUGCUGCACGUGCAGCAGGCGCUUGGCGAGAUGAUAGCGAGCGCAAAGGUACAGGCCAUAAAGA ...(((...((((.---------------((((...(((((......))))).)))).)))))))(((((((.(.........))))))))...(((....)))....... ( -31.40) >consensus UUGCUGACACGGCU_______________GCGGUCAAGUGCGUCACAAUGCUGCACGUGCAGCAGGCAUUGGCCGAGAUGAUAGCCAGUGCCAAGGUGCAGGCCAUUAGGA ..((((.((((((................((......))((((....)))).)).)))))))).(((((((((..........)))))))))..(((....)))....... (-29.50 = -28.87 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:26 2006