Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,775,394 – 18,775,501 |
Length | 107 |
Max. P | 0.991302 |
Location | 18,775,394 – 18,775,501 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 92.15 |
Mean single sequence MFE | -27.48 |
Consensus MFE | -23.06 |
Energy contribution | -23.30 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -2.21 |
Structure conservation index | 0.84 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18775394 107 + 20766785 AACAAAAGCCGGCUGGAAAACUGAAGUAGAAGUGUCUUGAACCCGCUCAAGGACGCGAAUAAAAGUCAACACAUAAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAG .......(((((((......(((........(((((((((......)))).))))).........((((((.......)))))).......)))....))))))).. ( -27.90) >DroSec_CAF1 138137 105 + 1 AACAAAAGCCGGCUGGAAAACUGAAGAGGAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC--AAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAA .......(((((((......(((..((...((((((((((......)))))).))))........((((((.--....))))))...))..)))....))))))).. ( -29.10) >DroSim_CAF1 140045 105 + 1 AACAAAAGCCGGCUGGAAAACUGAAGAGGAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC--AAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAA .......(((((((......(((..((...((((((((((......)))))).))))........((((((.--....))))))...))..)))....))))))).. ( -29.10) >DroEre_CAF1 139155 103 + 1 AACAAA-GCCGGCUGGCAAACUGAAGU-CAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACGC--ACAAUGUUGAGAGUCAACAGGGAAAGUUGGUAA ......-(((((((..(...(((..((-((.(((((((((......)))))).))))))).....((((((.--....)))))).......))).)..))))))).. ( -29.20) >DroYak_CAF1 140474 104 + 1 AACAAA-ACCGGCUGGCAAACUCAAGAGGAAGUGUCUUCAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC--AAAAUGUUGAGAGUCAACAGGGAAAGUUGCUAA ......-..((((.(((........(((((....)))))....(......)))))))).....((.((((..--....(((((.....)))))......)))))).. ( -22.10) >consensus AACAAAAGCCGGCUGGAAAACUGAAGAGGAAGUGUCUUGAACCCGCUCAAGGCCGCUGAUAAAAGUCAACAC__AAAAUGUUGAGAGUCAACAGGGAAAGUUGGCAA .......(((((((......(((.......((((((((((......)))))).))))........((((((.......)))))).......)))....))))))).. (-23.06 = -23.30 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:01 2006