| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,771,354 – 18,771,461 |
| Length | 107 |
| Max. P | 0.836568 |
| Location | 18,771,354 – 18,771,461 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 91.85 |
| Mean single sequence MFE | -25.47 |
| Consensus MFE | -22.00 |
| Energy contribution | -22.00 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18771354 107 - 20766785 CUGCUCGCGCCAGCUCUGCAUAUCAGAGACUCACGUCAGAUGUCACUAAUCUAAAUUUAUGCAAAUUGCCAACUGUCUGAGUUGGCUCACAUGCGAUUUCCUCCACC------- ....(((((.......((((((.....(((....)))((((.......)))).....))))))....(((((((.....))))))).....)))))...........------- ( -25.80) >DroSec_CAF1 133877 105 - 1 CUGCAC--GCCAGCUCUGCAUAUCAGAGACUCACGUCAGAUGUCACUAAUCUAAAUUUAUGCAAAUUGCCAACUGUCUGAGUUGGCUCACAUGCGAUUUCCUCCACU------- (((.((--(..(((((((.....))))).))..))))))....................((((....(((((((.....))))))).....))))............------- ( -25.60) >DroSim_CAF1 136263 105 - 1 CUGCUC--GCCAGCUCUGCAUAUCAGAGACUCACGUCAGAUGUCACUAAUCUAAAUUUAUGCAAAUUGCCAACUGUCUGAGUUGGCUCACAUGCGAUUUCCUCCACC------- ....((--((......((((((.....(((....)))((((.......)))).....))))))....(((((((.....)))))))......))))...........------- ( -24.90) >DroEre_CAF1 135818 105 - 1 CUGCUC--GCCAGCUCUGCAUAUCAGAGACUCACGUCAGAUGUCACUAAUCUAAAUUUAUGCAAAUUGCCAACUGUCUGAGUUGGCUCACAUGCGAUUUCCUCCGCC------- ....((--((......((((((.....(((....)))((((.......)))).....))))))....(((((((.....)))))))......))))...........------- ( -24.90) >DroYak_CAF1 136991 105 - 1 CUGCUC--GCCAGCUCUGCAUAUCAGAGACUCACGUCAGAUGUCACUAAUCUAAAUUUAUGCAAAUUGCCAACUGUCUGAGUUGGCUCACAUGCGAUUUCCUCCACC------- ....((--((......((((((.....(((....)))((((.......)))).....))))))....(((((((.....)))))))......))))...........------- ( -24.90) >DroAna_CAF1 134152 102 - 1 AUGC------------UGCAUAUCAGAGACUCACGUCAGAUGUCACUAAUCUAAAUUUAUGCAAAUUGCCAACUGUCUGAGUUGGCUCACAUGCGAUUGCCGCAGCCAGAGUGA ..((------------(((..(((((.(((((......)).))).)).............(((....(((((((.....))))))).....))))))....)))))........ ( -26.70) >consensus CUGCUC__GCCAGCUCUGCAUAUCAGAGACUCACGUCAGAUGUCACUAAUCUAAAUUUAUGCAAAUUGCCAACUGUCUGAGUUGGCUCACAUGCGAUUUCCUCCACC_______ .(((............((((((.....(((....)))((((.......)))).....))))))....(((((((.....)))))))......)))................... (-22.00 = -22.00 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:59 2006