| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,769,802 – 18,769,900 |
| Length | 98 |
| Max. P | 0.610797 |
| Location | 18,769,802 – 18,769,900 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 81.72 |
| Mean single sequence MFE | -33.37 |
| Consensus MFE | -19.85 |
| Energy contribution | -21.10 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18769802 98 + 20766785 AUAAGG---GCCCAAGCCGCUGACAAAUGUUGGCCAAACAGAGGAAGGCCCUUUGUGCAGCCAGCGAUACGC-UCGAAAUGAA-------UUUAUCGCUGCUUUUCGAG ...(((---(((....((((..((....))..))(.....).))..))))))(((...(((.(((((((.(.-((.....)).-------).))))))))))...))). ( -29.90) >DroSec_CAF1 132340 97 + 1 AUAAGG---GCGCAAGCCGCUGACAAAUGUUGGCCA-ACAGAGGAAGGCCCUUUGUGCAGCCAGCGAUACGC-UCGAAAUGAA-------UUUAUUGCUGCUCUUCGAG ...(((---((....))).))......(((((((..-(((((((.....)))))))...))))))).....(-(((((..(..-------..........)..)))))) ( -31.90) >DroSim_CAF1 134696 97 + 1 AUAAGG---GCGCAUGCCGCUGACAAAUGUUGGCCA-ACAGAGGAAGGCCCUUUGUGCAGCCAGCGAUACGC-UCGAAAUGAA-------UUUAUCGCUGCUCUUCGAG ..((((---((((.(((.((..((....))..))..-(((((((.....)))))))))))).(((((((.(.-((.....)).-------).))))))))))))).... ( -33.50) >DroEre_CAF1 134265 83 + 1 AUAAGG---GCGCAAGCCGCUGACAAAUGUUGGCCA-ACAGAGGAAGCUCCUUUGUGCAGCCAGCG---------------AA-------UUUAUCGCUGCUCCUGGCG .....(---((....)))((..((....))..))..-(((((((.....))))))).(((.(((((---------------(.-------....))))))...)))... ( -33.10) >DroYak_CAF1 135391 100 + 1 AUAAGGGGGGCGAAAGCCGCUGACAAAUGUUGGCCA-ACAGAGGAAGCCCCUUUGUGCAGCCAGCGAUACGC-UCGAAAUGAA-------UUUAUCGCUGCUCUUGAAG .((((((.(((....)))((..((....))..))..-(((((((.....))))))).....((((((((.(.-((.....)).-------).))))))))))))))... ( -36.70) >DroAna_CAF1 132355 104 + 1 AUAAGG---GCGCAAGCCCCUGACAAAUGUUGGUCG-AAAGCG-AGCGAACUCUGGGCAGCCAGCGAUACUCCCCGAAAUGUAUUACUACUUUAUGGCUGCUCCUUCAG ....((---((....))))((((....((((.(.(.-...)).-))))......((((((((((..((((..........))))..).......)))))))))..)))) ( -35.11) >consensus AUAAGG___GCGCAAGCCGCUGACAAAUGUUGGCCA_ACAGAGGAAGGCCCUUUGUGCAGCCAGCGAUACGC_UCGAAAUGAA_______UUUAUCGCUGCUCUUCGAG .........((....)).((..((....))..))...(((((((.....)))))))..(((.(((((((.......................))))))))))....... (-19.85 = -21.10 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:56 2006