Locus 5953

Sequence ID 2R_DroMel_CAF1
Location 18,768,069 – 18,768,176
Length 107
Max. P 0.709391
window9551

overview

Window 1

Location 18,768,069 – 18,768,176
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 95.23
Mean single sequence MFE -21.42
Consensus MFE -19.20
Energy contribution -19.36
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.26
Structure conservation index 0.90
SVM decision value 0.37
SVM RNA-class probability 0.709391
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18768069 107 + 20766785
AAUUUCAUUUAUUACUAAAUUCCGGCUAACGGCUGCAAAAAGCCAAUAAAUUUCACUUAAACAUUGUAUGUUUUAGAUGCAGCGAAAGACGAAGCUUUAAGUCGGUU
.....................((((((...((((......))))..((((((((.((.((((((...)))))).)).....((....).))))).)))))))))).. ( -21.80)
>DroSec_CAF1 130608 107 + 1
AAUUUCAUUUAUUAAUAAAUUCCGGCUAAUGGCUGCAAAAAGCCAAUAAAUUUCACUUAAACAUUGUAUGUUUUAGUUGCAGCGAAAGACGAAGCUUUAAGUCGGUU
.....................((((((..(((((......))))).(((((((((((.((((((...)))))).)))....((....).))))).)))))))))).. ( -23.00)
>DroSim_CAF1 132977 107 + 1
AAUUUCAUUUAUUACUAAAUUCCGGCUAACGGCUGCAAAAAGCCAAUAAAUUUCACUUAAACAUUGUAUGUUUUAGAUGCAGCGAAAGACGAAGCUUUAAGUCGGUU
.....................((((((...((((......))))..((((((((.((.((((((...)))))).)).....((....).))))).)))))))))).. ( -21.80)
>DroEre_CAF1 132665 107 + 1
AAUUUCAUUUAUUACUAAAUUCCGGCUAACGGCUGCAAAAAGCCAAUAAAUUUCACUUAAACAUUGUAUGUUUUAGGUGCAGCGCAGGACGAAACUUUAAGGCGGAU
....................((((.((...((((......))))..((((((((.((.((((((...)))))).))((.(......).)))))).)))))).)))). ( -22.00)
>DroYak_CAF1 133624 107 + 1
AAUUCCAUUUAUUACUAAAUUCCGGCUAACGGCUGCAAAAAGCCAAUAAAUUUCACUUAAACAUUGUAUGUUUUAGAUGCAGCGAAAGACGAAACUUUAAGUCGCAC
......................(((((...((((......))))..((((((((.((.((((((...)))))).)).....((....).))))).)))))))))... ( -18.50)
>consensus
AAUUUCAUUUAUUACUAAAUUCCGGCUAACGGCUGCAAAAAGCCAAUAAAUUUCACUUAAACAUUGUAUGUUUUAGAUGCAGCGAAAGACGAAGCUUUAAGUCGGUU
.....................((((((...((((......))))..((((((((.((.((((((...)))))).)).....((....).))))).)))))))))).. (-19.20 = -19.36 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:55 2006