Locus 5952

Sequence ID 2R_DroMel_CAF1
Location 18,767,547 – 18,767,640
Length 93
Max. P 0.519406
window9550

overview

Window 0

Location 18,767,547 – 18,767,640
Length 93
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 79.30
Mean single sequence MFE -18.24
Consensus MFE -9.00
Energy contribution -9.12
Covariance contribution 0.12
Combinations/Pair 1.22
Mean z-score -1.89
Structure conservation index 0.49
SVM decision value -0.03
SVM RNA-class probability 0.519406
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18767547 93 - 20766785
AAGCCGGCAACAAUGUU-UAAAACAAAGCCAAAACAAAAAU------UGAAAUUGGCCAGCUAUGGAA--AAGCGUUCAAUG-----GGCCAAAUAAUGAAACAAUG----
..((((((.....(((.-....)))..))).........((------((((.((..(((....)))..--))...)))))).-----))).................---- ( -16.20)
>DroSec_CAF1 130104 93 - 1
AAGCCGGCAACAAUGUU-UAAAACAAAGCCAAAACAAAAAU------UGAAAUUGGCCAGCUAUGGAA--AAGCGUUCAACG-----GGCCAAAUAAUGAAACAAUG----
..((((((.....(((.-....)))..)))..........(------((((.((..(((....)))..--))...)))))..-----))).................---- ( -14.90)
>DroEre_CAF1 132145 95 - 1
AAGCCGGCAACAAUGUUUUAAAACAAAGCCAAAACAAAAAU------UGAAAUUGGCCAGCUAUGGAA-AAAGCGUUCAACG-----GGCCAAAUAAUGAAACAAUG----
.....(....)..(((((((.........(((........)------))...((((((.(((.(....-).)))(.....).-----))))))....)))))))...---- ( -17.40)
>DroYak_CAF1 133103 95 - 1
AAGCCGGCAACAAUGUU-UAAAACAAAGCCAAAACAAAAAU------UGAAAUUGGCCAGCUAUGGAAAAAAGCGUUCAACG-----GGCCAAAUAAUGAAACAAUG----
.....(((.....(((.-....)))..)))...........------.....((((((.(((.........)))(.....).-----))))))..............---- ( -13.80)
>DroAna_CAF1 130438 104 - 1
AAACUGAAAACAGUUUU-UAAAACAAAAGCAGAAUCGCAAUUGCAAUUGGAAUUGGCCGGCCAG------CAGUGGCCACUGGCCAGAGCCGAGUAAUGAAAGGAUAAAUG
((((((....)))))).-..........((......)).(((((..((((..(((((((((((.------...)))))...))))))..)))))))))............. ( -28.90)
>consensus
AAGCCGGCAACAAUGUU_UAAAACAAAGCCAAAACAAAAAU______UGAAAUUGGCCAGCUAUGGAA__AAGCGUUCAACG_____GGCCAAAUAAUGAAACAAUG____
.....(((.....((((....))))..)))......................((((((.(((.........)))((...))......)))))).................. ( -9.00 =  -9.12 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:54 2006