Locus 5951

Sequence ID 2R_DroMel_CAF1
Location 18,766,555 – 18,766,654
Length 99
Max. P 0.627283
window9549

overview

Window 9

Location 18,766,555 – 18,766,654
Length 99
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 86.74
Mean single sequence MFE -32.05
Consensus MFE -23.36
Energy contribution -24.48
Covariance contribution 1.12
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.73
SVM decision value 0.19
SVM RNA-class probability 0.627283
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18766555 99 + 20766785
UGGCUUUGUUGUGUUCCAC-AACGGCACGUUUCGCUG--CUCCGGUGCGGCAAUUAGCCAGGAAUAUAAUAAAA------CGAGUGCUUGCUGCACUGACAACGUUUA
..(.(((((((((((((..-...(((....((.((((--(......)))))))...))).))))))))))))).------).(((((.....)))))........... ( -30.00)
>DroSec_CAF1 129087 99 + 1
UGGCUUUGUUGUGUUCCAC-AGCGGCACGUUUCGCUG--CUCCGCUGCGGCAAUUAGCCAGGAAUAUAAUAAAC------CGAGUGCUUGCUGCACUGACAACGUUUA
.((.(((((((((((((.(-(((((..((......))--..)))))).(((.....))).))))))))))))))------).(((((.....)))))........... ( -38.10)
>DroEre_CAF1 131205 99 + 1
UGGCUUUGUUGUGUUCCAC-AGCGGCACGUUUCGCUG--CCCCGGUGCGGCAAUUAGCCAGGAAUAUAAUAAAA------CGAGUGCUUGCUGCACUGACAACGUUUA
..(.(((((((((((((.(-(((((......))))))--.........(((.....))).))))))))))))).------).(((((.....)))))........... ( -33.00)
>DroYak_CAF1 132099 99 + 1
UGGCUUUGUUGUGUUCCAC-AGCGGCACGUUUCGCUG--CUCCGGUGCGGCAAUUAGCCAGGAAUAUAAUAAAA------CGAGUGCUUGCUGCACUGACAACGUUUA
..(.(((((((((((((..-((((((.......))))--)).......(((.....))).))))))))))))).------).(((((.....)))))........... ( -33.70)
>DroAna_CAF1 129645 108 + 1
UGGCUUUGUUGUGUUCCGCGAGCGGCACGUCCCGUUCGUAUCUGGACCUGCAAUUAGCCGCGAAUUAAAUAAAAAUAAAAUUCCUGCCCGCUGCACUGACAACAUUUA
.((((..((((((.(((((((((((......))))))))....))).).))))).))))(((..........................)))................. ( -25.47)
>consensus
UGGCUUUGUUGUGUUCCAC_AGCGGCACGUUUCGCUG__CUCCGGUGCGGCAAUUAGCCAGGAAUAUAAUAAAA______CGAGUGCUUGCUGCACUGACAACGUUUA
....(((((((((((((...(((((......)))))............(((.....))).))))))))))))).........(((((.....)))))........... (-23.36 = -24.48 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:53 2006