Locus 5950

Sequence ID 2R_DroMel_CAF1
Location 18,765,570 – 18,765,686
Length 116
Max. P 0.829492
window9548

overview

Window 8

Location 18,765,570 – 18,765,686
Length 116
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 95.24
Mean single sequence MFE -23.15
Consensus MFE -20.68
Energy contribution -21.68
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.71
SVM RNA-class probability 0.829492
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18765570 116 - 20766785
AAGUACAGGAGAGCUGACGGAAAACACUGCA-CCGCCCCUCAUUUUAAUAAAAGGGUUUCAAAGUAAGAAAUAACGGAAACUGACUAUGUCAACAUAAUUAACUCUGAAGUGAGAAA
.......((.(.(.((.(((......)))))-.).)))(((((((((.......((((((...((.(....).)).))))))...((((....))))........)))))))))... ( -20.50)
>DroSec_CAF1 128090 116 - 1
AAGUACAGGAGAGCUGACGGAAAACACUGCA-CCGCCCCUCAUUUUAAUAAAAGGGUUUCAAAGUAAGAAAUUACGGAAACUGACUAUGUCAACAUAAUUAACUCUGAAGUGAGAAA
.......((.(.(.((.(((......)))))-.).)))(((((((((.......((((((...((((....)))).))))))...((((....))))........)))))))))... ( -24.40)
>DroSim_CAF1 128946 116 - 1
AAGUACAGGAGAGCUGACGGAAAACACUGCA-CCGCCCCUCAUUUUAAUAAAAGGGUUUCAAAGUAAGAAAUUACGGAAACUGACUAUGUCAACAUAAUUAACUCUGAAGUGAGAAA
.......((.(.(.((.(((......)))))-.).)))(((((((((.......((((((...((((....)))).))))))...((((....))))........)))))))))... ( -24.40)
>DroEre_CAF1 130242 115 - 1
AAGUACAGGAGAGCUGACGGAAAAUACUGCA-CCGCCCCUCAUUUUAAUAAAAGGGUUUCAAAGUAAGAAAUUACGGAAACUGACUAUGUCAACAUAAUUAACUCUGAAGUGAGAA-
.......((.(.(.((.(((......)))))-.).)))(((((((((.......((((((...((((....)))).))))))...((((....))))........)))))))))..- ( -24.40)
>DroYak_CAF1 131062 116 - 1
AAGUACAGGAGAGCUGACGGAAAAUACUGCA-CCGCCCCUCAUUUUAAUAAAAGGGUUUCAAAGUAAGAAAUUACGGAAACUGACUAUGUCAACAUAAUUAACUCUGAAGUGAGAAA
.......((.(.(.((.(((......)))))-.).)))(((((((((.......((((((...((((....)))).))))))...((((....))))........)))))))))... ( -24.40)
>DroAna_CAF1 128628 115 - 1
AA--AGCGGAGAGCACACGGAAAAUACUGCAACCGCCCCUCAUUUUAAUAAAAGGGUUGAAAAGAAAGAAAUUACUGAAACUGACUAUGUCAACAUAAUUAACUUUGAAGUGAGAAG
..--.((((...(((............)))..))))..((((((((((......((((....((.((....)).))..))))...((((....)))).......))))))))))... ( -20.80)
>consensus
AAGUACAGGAGAGCUGACGGAAAACACUGCA_CCGCCCCUCAUUUUAAUAAAAGGGUUUCAAAGUAAGAAAUUACGGAAACUGACUAUGUCAACAUAAUUAACUCUGAAGUGAGAAA
.......((.(.(.((.(((......))))).)).)).(((((((((.......((((((...((((....)))).))))))...((((....))))........)))))))))... (-20.68 = -21.68 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:52 2006