Locus 5947

Sequence ID 2R_DroMel_CAF1
Location 18,754,905 – 18,755,025
Length 120
Max. P 0.801504
window9541

overview

Window 1

Location 18,754,905 – 18,755,025
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.83
Mean single sequence MFE -47.28
Consensus MFE -26.98
Energy contribution -27.46
Covariance contribution 0.48
Combinations/Pair 1.47
Mean z-score -1.89
Structure conservation index 0.57
SVM decision value 0.62
SVM RNA-class probability 0.801504
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18754905 120 + 20766785
CUUGUUCCUUGGGCUUUUCUUGCACCAGGGCGGCCUUUUUGGCGGGGACAACCGUGGGUAUUUCCGCAUUGCCACGUUUAGGAGGCGCAGACUUUUUCUUAUUGUCCACCUCAGGGGCAA
..((((((((((((.......)).)))((((((((((((..(((.((.(((..(((((....))))).))))).)))..)))))))..(((.....)))...))))).....))))))). ( -42.30)
>DroSec_CAF1 117625 120 + 1
CUUGUUCUUUGGGCUUUUCCUGCACCAGGGCCGCCUUUUUGGCGGGAACACCCUCGGGUUUUCCCGCAUCGACACGUGUAGGGGGCGCCGAUCUCUUUUUAUAGACCACCUCAGGGGCAA
..(((((((..(((.(..(((((((.(((....))).....(((((((.(((....))).)))))))........)))))))..).)))....(((......))).......))))))). ( -45.20)
>DroSim_CAF1 118358 120 + 1
CUUGUUCCUUGGGCUUUUCCUGCACCAGGGCCGCCUUUUUGGCGGGAACAACAGCGGUUUUUCCCGCAUUGACACGUGUAGGAGGCGCCGAUCUCUUUUUACAGACCACCUCGGGGGCAA
..(((((((..(((.((((((((((.....(((((.....)))))........((((......))))........)))))))))).)))(.(((........))).).....))))))). ( -45.10)
>DroEre_CAF1 120269 111 + 1
CUUGUUCCUUGGGCGUUUCUUGGACUAGGGCAGCCCUUUUGGGGGCAGCACCCGUGGGCU---------UGCCACGUGUAGGAGGCGCCGAUCUCUUUUUCUGGACUACAGCAGGAGCUA
...((((((..(((((((((((.((...((((((((...((((.......)))).)))).---------))))..)).)))))))))))...........(((.....))).)))))).. ( -50.40)
>DroYak_CAF1 120513 120 + 1
CUAGCUCCUUGGGCACUUCCUGGACCGGGGAUCCCCUUUUGGCGGCAGCACCCUUGGCUUUGCCUGCGUUGCCACGUGUAGCAGGCGCCGGUCUCUUUUUGGUGGCCGCCGCAGGAGCAA
...(((((((((.((((....((((((((....)))....((((.(.((((.(.((((..((....))..)))).).)).)).).)))))))))......)))).)))....)))))).. ( -53.40)
>consensus
CUUGUUCCUUGGGCUUUUCCUGCACCAGGGCCGCCUUUUUGGCGGGAACACCCGUGGGUUUUCCCGCAUUGCCACGUGUAGGAGGCGCCGAUCUCUUUUUAUAGACCACCUCAGGGGCAA
...((((((..(((.(((((((.((.((((...))))....(((((((.(((....))).)))))))........)).))))))).)))....((........)).......)))))).. (-26.98 = -27.46 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:45 2006