| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,750,439 – 18,750,546 |
| Length | 107 |
| Max. P | 0.707057 |
| Location | 18,750,439 – 18,750,546 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.45 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -14.47 |
| Energy contribution | -14.58 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18750439 107 + 20766785 AAAUAUAUUUCCACUUCGAGCCGCCGAAAGGUGACACUGCCUGCAUUUU-CUGCACCUCUGU-----GUUUUUUCAGCCCUUUUUUUUUUUUUUGACUGGACUGAGGUAAAUA ............((((((..(((((....)))(((((....((((....-.)))).....))-----)))............................))..))))))..... ( -21.90) >DroSec_CAF1 113182 101 + 1 AAAUAUAUUUCCACUUCGAGCCGCCGAAAGGUGACACUGCUUGCAUUUU-CUGCACCUCUGU-----GUUUUUUUAGCUCUU------UUUUUGGACUGGACUGAGGUAAAUA ............(((((((((((((....))))((((....((((....-.)))).....))-----)).......))))..------.....((......)))))))..... ( -23.00) >DroSim_CAF1 113944 103 + 1 AAAUAUAUUUCCACUUCGAGCCGCCGAAAGGUGACACUGCCUGCGUUUU-CUGCACCUCUGU-----GUUUUUUUAGCCCUUUU----UUUUUGGACUGGACUGAGGUAAAUA ............((((((..(((((....)))(((((....((((....-.)))).....))-----))).....((.((....----.....)).))))..))))))..... ( -21.80) >DroEre_CAF1 115875 93 + 1 AAAUAUAUUUCCACUUGGAGUCGCCGAAAGGUGACACUGUCUGCAUUUU-CUGCACCUCUG--------UUUUUUAACCUUUUUUU-----------UGGAGUGAGGUAAAUA .........(((....)))((((((....)))))).......(((....-.)))(((((..--------..((((((........)-----------))))).)))))..... ( -24.40) >DroYak_CAF1 116019 112 + 1 AAAUAUAUUUCCACUUCGAGCCGCCGAAAGGUGACACUGCCUGCAUUUU-CUGCACCUCUCUCGCUUUUUUUUUCAGCCUUUUUAUUUUUUGUGUACUGGGGUGAGGUAAAUA ............(((((((((((((....))))........((((....-.))))........)))).........(((((..(((.......)))..))))))))))..... ( -23.60) >DroAna_CAF1 109815 82 + 1 AAAUAUAUUUCCACCUCGAGCCGCCGAAAGGUGACACUGCCUGCAUUUUUGUGCAUCU-----------U------------------UUUUCGG--CAGACUCGGAUAAAAU ...............(((((.((((....))))...((((((((((....)))))...-----------.------------------.....))--))).)))))....... ( -24.70) >consensus AAAUAUAUUUCCACUUCGAGCCGCCGAAAGGUGACACUGCCUGCAUUUU_CUGCACCUCUGU_____GUUUUUUUAGCCCUUUU____UUUUUGGACUGGACUGAGGUAAAUA ............((((((..(((((....))).........((((......))))...........................................))..))))))..... (-14.47 = -14.58 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:44 2006