Locus 5943

Sequence ID 2R_DroMel_CAF1
Location 18,745,006 – 18,745,103
Length 97
Max. P 0.951541
window9533

overview

Window 3

Location 18,745,006 – 18,745,103
Length 97
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -28.35
Consensus MFE -16.56
Energy contribution -16.40
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -2.41
Structure conservation index 0.58
SVM decision value 1.41
SVM RNA-class probability 0.951541
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18745006 97 - 20766785
-------------G-CAAAGCCUUCCCAUUUUCUCUCAGUGCACCGCGACUGCACCCCCAAGGGGAACGCGAAAUGUGUUUUAAAUUAAAGACACAACUUUUGCUGAAAUA
-------------(-((((((.(((((...........(((((.......))))).......))))).))....((((((((......))))))))...)))))....... ( -25.67)
>DroSec_CAF1 107709 110 - 1
UGGUAAGUUCCCUGCGAAAGCCUUCCCAUUUUCUCUCAGUGCACCGCGACCGCACC-CCAAGGGGAACGCGAAAUGUGUUUUAAAUUAAAGACACAACUUUUGCUGAAAUA
......(((((((((....)).................((((.........)))).-....)))))))((((((((((((((......))))))))..))))))....... ( -31.70)
>DroSim_CAF1 108488 110 - 1
UAGCAAGUUCCCUGCAAAAGCCUUCCCAUUUUCUCUCAGUGCACCGCGACCGCACC-CCAAGGGGAACGCGAAAUGUGUUUUAAAUUAAAGACACAACUUUUGCUGAAAUA
(((((((((((((((....)).................((((.........)))).-....)))))))......((((((((......))))))))....))))))..... ( -28.70)
>DroEre_CAF1 110191 108 - 1
CA-UAUGUCAAUGGCGAACGCGUUCCC-AUUUCUCUCAGUGCAGCGCGAGCGCAAC-CCAAGGGGAAUGCGAAAUGUGUUUUAAAUUAAAGACACAACUUUGGCUGAAAUA
..-...(((((.(.....(((((((((-...........(((.((....)))))..-.....)))))))))...((((((((......)))))))).).)))))....... ( -34.47)
>DroYak_CAF1 110395 87 - 1
-----------------------UAGUAUUUUCUCUCAGUGCACUGCGAACACAAG-CCAAGGGGAAUGCGAAAUGUGUUUUAAAUUAAAGACACAACUUUGGCUGAAAUA
-----------------------......((((((.(((....))).)).....((-(((((((.....)....((((((((......)))))))).)))))))))))).. ( -21.20)
>consensus
____A_GU_____GCGAAAGCCUUCCCAUUUUCUCUCAGUGCACCGCGACCGCACC_CCAAGGGGAACGCGAAAUGUGUUUUAAAUUAAAGACACAACUUUUGCUGAAAUA
...................................(((((....((((.((.(........).))..))))...((((((((......))))))))......))))).... (-16.56 = -16.40 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:38 2006