Locus 5940

Sequence ID 2R_DroMel_CAF1
Location 18,742,755 – 18,742,846
Length 91
Max. P 0.896687
window9528

overview

Window 8

Location 18,742,755 – 18,742,846
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.77
Mean single sequence MFE -25.88
Consensus MFE -22.07
Energy contribution -22.96
Covariance contribution 0.89
Combinations/Pair 1.05
Mean z-score -2.01
Structure conservation index 0.85
SVM decision value 0.99
SVM RNA-class probability 0.896687
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18742755 91 + 20766785
CCGCUAGAUGGCGCCAGUCAAGGCGUCACUCAAGUGUCGCCCGCGCUCUUGGCUUAGGCGUCAAAAAAGAAAAAA-----AAGAAAACUUUAAAAA
........(((((((((((((((((((((....)))......)))).)))))))..)))))))............-----................ ( -27.00)
>DroGri_CAF1 148504 69 + 1
CCGCUAGAUGGCGCCAG-CGAGGCGUCAGUCAAGUGUCGCCCGC--UCUCAGCUUAGAAG-CAAAUGA---------------AGG--------AG
..(((....(((...((-((.((((.((......)).)))))))--)....)))....))-)......---------------...--------.. ( -21.80)
>DroSec_CAF1 105458 81 + 1
CCGCUAGAUGGCGCCAGUCAAGGCGUCACUCAAGUGUCGCCCGCGCUCUUGGCUUAGGCGUCAAAAAA---------------AAGACUUUAAAAA
........(((((((((((((((((((((....)))......)))).)))))))..))))))).....---------------............. ( -27.00)
>DroSim_CAF1 106239 81 + 1
CCGCUAGAUGGCGCCAGUCAAGGCGUCACUCAAGUGUCGCCCGCGCUCUUGGCUUAGGCGUCAAAAAA---------------AAGACUUUAAAAA
........(((((((((((((((((((((....)))......)))).)))))))..))))))).....---------------............. ( -27.00)
>DroEre_CAF1 108003 80 + 1
CCGCUAGAUGGCGCCAGUCAAGGCGUCACUCAAGUGUCGCCCGCGCUCCUGGCUUAGGCGUCAGAA----------------AAAGACUUUAAAAA
..(((((..(((((.......((((.(((....))).)))).))))).)))))(((((.(((....----------------...))))))))... ( -25.50)
>DroYak_CAF1 108048 96 + 1
CCGCUAGAUGGCGCCAGUCAAGGCGUCACUCAAGUGUCGCCCGCGCUCUUGGCUUAGGCGUCAAAAAAAAAAAAAGACGUAAAAAGACUUUAAAAA
........(((((((((((((((((((((....)))......)))).)))))))..)))))))................................. ( -27.00)
>consensus
CCGCUAGAUGGCGCCAGUCAAGGCGUCACUCAAGUGUCGCCCGCGCUCUUGGCUUAGGCGUCAAAAAA_______________AAGACUUUAAAAA
........(((((((((((((((((.(((....))).)))).......))))))..)))))))................................. (-22.07 = -22.96 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:33 2006