| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,032,871 – 3,032,984 |
| Length | 113 |
| Max. P | 0.511428 |
| Location | 3,032,871 – 3,032,984 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.65 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -20.52 |
| Energy contribution | -21.88 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3032871 113 - 20766785 GCCACGUCGAUUGUAAGGUAAACAGCGAUCGAGAUGGGUACCAAUAGGAGAAUGCUGUAAAGCGUUGAACUGGUCAUGAUGAUGUCCAAUGCAUGACUAGUAUAAUUUAAGAC .(((..((((((((..........))))))))..)))...((....))..((((((....))))))..((((((((((.((.....))...))))))))))............ ( -32.50) >DroGri_CAF1 6017 113 - 1 GCAACAUCAAUUGUUAGGUAAACGGCGGCAACAAUGGGUAACAGCAAUAAUAGGCCCUGCAGCAUGGAACUGGUCAGCACAAAGUCCAGCAAAUGACUGCCCACAUUCAGAGC ((((((.....))))........(((((((.....((((..............))))....((.((((..((.......))...))))))...)).)))))..........)) ( -22.34) >DroSec_CAF1 6498 113 - 1 GCCACGUCGUUUGUAAGGUAAACAGCGAUCGAGAUGGGUACCAAUAGGAGAAUGCUGUAGAGCAUUGAACUGGUCGUGAUGAUGUCCAAUGCAUGACUAGUAAAAUUUAAGAC .....(((........((((..((.(......).))..))))........((((((....))))))..((((((((((.((.....))...)))))))))).........))) ( -27.80) >DroSim_CAF1 6515 113 - 1 GCCACGUCGAUUGUAAGGUAAACAGCGAUCGAGAUGGGUACCAAUAGGAGAAUGCUGUAGAGCAUUGAACUGGUCAUGAUGAUGUCCAAUGCAUGACUAGUAAAAUUUAAGAC .(((..((((((((..........))))))))..)))...((....))..((((((....))))))..((((((((((.((.....))...))))))))))............ ( -32.20) >DroEre_CAF1 6957 113 - 1 GCCACAUCGGUUGUAAGGUAAACAGCUAUUGAAAUGGGUACCAAUAGAAGAAUGCUGUAAAGCGUAGAACUGGUCAUGAUGAUGUCCAAUGCAUGACUAGUACAAUUUAAGAU ........((((((..((((..((.(....)...))..)))).........(((((....)))))...((((((((((.((.....))...))))))))))))))))...... ( -27.60) >DroYak_CAF1 6641 113 - 1 GCCACAUCGAUUGUAAGGUAAACAGCGAUUGAAAUGGGUACCACAAUGAGAACGCUGUAAAACGUAGAACUGGUCAUGAUGAUGUCCAAUGCAUGACUGGUACAAUUUAAGAU .(((..((((((((..........))))))))..)))(((((.........(((........)))......(((((((.((.....))...)))))))))))).......... ( -26.30) >consensus GCCACAUCGAUUGUAAGGUAAACAGCGAUCGAAAUGGGUACCAAUAGGAGAAUGCUGUAAAGCAUUGAACUGGUCAUGAUGAUGUCCAAUGCAUGACUAGUAAAAUUUAAGAC .(((..((((((((..........))))))))..))).............((((((....))))))..((((((((((((........)).))))))))))............ (-20.52 = -21.88 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:21 2006