Locus 5936

Sequence ID 2R_DroMel_CAF1
Location 18,727,001 – 18,727,102
Length 101
Max. P 0.764414
window9521

overview

Window 1

Location 18,727,001 – 18,727,102
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 72.83
Mean single sequence MFE -27.02
Consensus MFE -6.70
Energy contribution -6.15
Covariance contribution -0.55
Combinations/Pair 1.29
Mean z-score -2.45
Structure conservation index 0.25
SVM decision value 0.51
SVM RNA-class probability 0.764414
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18727001 101 + 20766785
GGGGGGGGAGGAGAAGCAUAAACCGUGAAAA----GUCGAGUGAAAUGCAGAAAUUAUUGCAAAAUGUUUUUAUGACGAAUGAAAA-AUUCG-UUGACUCUGCCUCU
(((((.((((.((((((((..((((......----..)).))....(((((......)))))..))))))))..(((((((.....-)))))-))..)))).))))) ( -29.10)
>DroPse_CAF1 103453 103 + 1
GGGC--GACAAAGGGCUAAGGACAGGGAACUGCUGUUCGAAUGAGAGGCAAAAAUUAUUGCAAAAUGUUUUCAUGACGAAUGGAAAUACACG-CCAACGCCACG-CC
.(((--(......(((......(((....)))(((((((.(((((((((((......))))......)))))))..)))))))........)-))..))))...-.. ( -27.50)
>DroSim_CAF1 90741 99 + 1
GGGG--AGAGAAGGAGCAUAAACCGUGAAAA----GUCGAGUGAAAUGCAGAAAUUAUUGCAAAAUGUUUUUAUGACGAAUGAAAA-AUUCG-UUGACUCUGCCUCG
((((--((((.((((((((..((((......----..)).))....(((((......)))))..))))))))..(((((((.....-)))))-))..)))).)))). ( -26.10)
>DroEre_CAF1 91254 84 + 1
--------------GGGAUAAACCAUGAACA----GUCGCGUGAAAUGCAAAAAUUAUUGCAAAAUGUUUUUAUGACGACUGAAAA-AUUCG-UUGGCUCUGCC---
--------------.((.....(((((((((----((((((((((((((((......)))))......))))))).))))))....-.))))-.))).....))--- ( -20.80)
>DroYak_CAF1 91966 100 + 1
GGGG--GGAGGAGCAGGAUAAACCGUGAACA----GUCGAGUGAAAUGCAAAAAUUAUUGCAAAAUGUUUUUAUGACGAAUGAAAA-AUUCGCUUGGCUCUGCCUCG
..((--((.(((((.((.....)).......----..((((((((.(((((......))))).....(((((((.....)))))))-.))))))))))))).)))). ( -31.10)
>DroPer_CAF1 103189 103 + 1
GGGC--GACAAAGGGCUAAGGACAGGGAACUGCUGUUCGAAUGAGAGGCAAAAAUUAUUGCAAAAUGUUUUCAUGACGAAUGGAAAUACACG-CCAACGCCACG-CC
.(((--(......(((......(((....)))(((((((.(((((((((((......))))......)))))))..)))))))........)-))..))))...-.. ( -27.50)
>consensus
GGGG__GGAGAAGGAGCAUAAACCGUGAACA____GUCGAGUGAAAUGCAAAAAUUAUUGCAAAAUGUUUUUAUGACGAAUGAAAA_AUUCG_UUGACUCUGCC_CC
....................................(((.(((((((((((......)))))......))))))..)))............................ ( -6.70 =  -6.15 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:27 2006