Locus 5934

Sequence ID 2R_DroMel_CAF1
Location 18,719,532 – 18,719,629
Length 97
Max. P 0.755365
window9519

overview

Window 9

Location 18,719,532 – 18,719,629
Length 97
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -25.12
Consensus MFE -14.02
Energy contribution -14.22
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -2.26
Structure conservation index 0.56
SVM decision value 0.49
SVM RNA-class probability 0.755365
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18719532 97 - 20766785
CCCAAAAAGCAU-----GGCCUGAACAAAUUGCUUCUUCUCUAUUUA-------UACGGCCUGCGGGCG--AGCCG-UUGCCAAUUAAUUAUAAUUGAUUGGC-GAUAUUAAC
........(((.-----((((..........................-------...))))))).((..--..))(-((((((((((((....))))))))))-)))...... ( -25.65)
>DroPse_CAF1 94037 103 - 1
ACCAAAAUUCGUUCUUUCUCUCUAACAAAUUGGCUAUUUUCA---UG-------CCACGCCUGCGGGUGAGAGCCGAUUGCCAAUUAAUUAUAAUUGAUUAGCGGAUAUUAAA
.((..((((.(((((...............((((........---.)-------)))((((....))))))))).))))((.(((((((....))))))).))))........ ( -22.60)
>DroSec_CAF1 82796 97 - 1
CCCAGAAAGCAU-----GGCCUGAACAAAUUGCUUCUUCUCUAUUUA-------UUCGGCCUGCGGGCG--AGCCG-UUGCCACUUAAUUAUAAUUGAUUGGC-GAUAUUAAC
........(((.-----((((.(((.((((............)))).-------)))))))))).((..--..))(-((((((.(((((....))))).))))-)))...... ( -25.40)
>DroSim_CAF1 83328 97 - 1
CCCAAAAAGCAU-----GGCCUGAACAAAUUGCUUCUUCUCUAUUUA-------UUCGGCCUGCGGGCG--AGCCG-UUGCCAAUUAAUUAUAAUUGAUUGGC-GAUAUUAAC
........(((.-----((((.(((.((((............)))).-------)))))))))).((..--..))(-((((((((((((....))))))))))-)))...... ( -29.10)
>DroEre_CAF1 83800 95 - 1
CCCAAAAAGC-------UGCCCUAACAAAUUGCCUCUUCUCUACUUU-------UUCGGCCUGCGGGCG--AGCCG-UUGCCAAUUAAUUAUAAUUGAUUGGC-GAUAUUAAC
........((-------(((((...((....(((.............-------...))).)).)))).--))).(-((((((((((((....))))))))))-)))...... ( -25.69)
>DroYak_CAF1 84195 99 - 1
CCCAAAAAAA------------AAACAAAUUGCUUCUUCUCUACUUAAAUAAUCAACGGCCUGCGGGCGAGAGCCG-UUGCCAAUUAAUUAUAAUUGAUUGGC-GAUAUUAAC
..........------------.............................((((((((((((....).)).))))-))((((((((((....))))))))))-)))...... ( -22.30)
>consensus
CCCAAAAAGCAU_____GGCCUGAACAAAUUGCUUCUUCUCUAUUUA_______UUCGGCCUGCGGGCG__AGCCG_UUGCCAAUUAAUUAUAAUUGAUUGGC_GAUAUUAAC
.................................................................(((....)))....((((((((((....)))))))))).......... (-14.02 = -14.22 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:25 2006