Locus 5933

Sequence ID 2R_DroMel_CAF1
Location 18,718,976 – 18,719,081
Length 105
Max. P 0.772468
window9518

overview

Window 8

Location 18,718,976 – 18,719,081
Length 105
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 77.89
Mean single sequence MFE -32.38
Consensus MFE -19.27
Energy contribution -19.40
Covariance contribution 0.13
Combinations/Pair 1.20
Mean z-score -1.96
Structure conservation index 0.60
SVM decision value 0.53
SVM RNA-class probability 0.772468
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18718976 105 + 20766785
GAACGGGUGGGCCGGGAUCGAGUAAUGGAUUGCGAACGGAAAGGCGAACGCGAACGUGAACGUGAACGUGAACGCGAACGCAGAGCAUUCCAAGAACGAUUCAUG-
...(((.....)))((((((.....((((.(((...(.....)(((..((((.((((........))))...))))..)))...))).))))....))))))...- ( -32.40)
>DroSec_CAF1 82268 93 + 1
GAACGGGAGGGCCGGGAUCGAGAAAUGGAUUGCGAACGGAAUGGCGAACGCGAACG------------UGAACGCGAACGCAGAGCAUUCCAGGAACGAUCCGUG-
..(((((.(..(((.((((.(....).)))).)....(((((((((..((((....------------....))))..)))....)))))).))..)..))))).- ( -33.10)
>DroSim_CAF1 82801 93 + 1
GAACGGGAGGGCCGGGAUCGAGAAAUGGAUUGCGACCGGAAUGGCGAACGCGAACG------------UGAACGCGAACGCAGAGCAUUCCAGGAACGAUCCGUG-
..(((((..((.((.((((.(....).)))).)).))(((((((((..((((....------------....))))..)))....))))))........))))).- ( -33.40)
>DroEre_CAF1 83309 82 + 1
GAACGGGUGGGUCGGGAUCGAGAACUGGGUCGCGAACGG------------GAACG------------GGAACGGGAGCGCGGAGCAUUCCGAGAACGUUCCCUAA
.........(.(((.((((.(....).)))).))).)((------------(((((------------....(((((((.....)).)))))....)))))))... ( -30.60)
>consensus
GAACGGGAGGGCCGGGAUCGAGAAAUGGAUUGCGAACGGAAUGGCGAACGCGAACG____________UGAACGCGAACGCAGAGCAUUCCAAGAACGAUCCGUG_
...(((.....)))((((((.....((((.(((..........((....))......................((....))...))).))))....)))))).... (-19.27 = -19.40 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:24 2006