Locus 5932

Sequence ID 2R_DroMel_CAF1
Location 18,710,348 – 18,710,452
Length 104
Max. P 0.815494
window9517

overview

Window 7

Location 18,710,348 – 18,710,452
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 76.25
Mean single sequence MFE -27.18
Consensus MFE -15.51
Energy contribution -16.64
Covariance contribution 1.13
Combinations/Pair 1.25
Mean z-score -1.87
Structure conservation index 0.57
SVM decision value 0.66
SVM RNA-class probability 0.815494
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18710348 104 + 20766785
GCAGCAAACUGCGUGGAAAAAUCAGGAACUCUGGGGAUUGAGUUUAAAGUUGUGAGUUAAUUGAAUGAGAACUCAGUCGUCCAUUCGAUUGUUCCCAUUGCAGU
.......((((((.((((.((((.(((....((((((((((((((..(((((.....)))))......)))))))))).))))))))))).))))...)))))) ( -29.80)
>DroSec_CAF1 73789 104 + 1
GCACCAAACUGCGUGGAAAAAUCAGGAACUCUGGGGAUUGAGUUUAAAGUUGUGAGUUAAUUGAAUGGGAACUCAGUCGUCCAUUCGAUUGUUCCCAUCGCAUU
.........((((.((((.((((.(((....((((((((((((((..(((((.....)))))......)))))))))).))))))))))).))))...)))).. ( -28.70)
>DroSim_CAF1 74194 104 + 1
GCAGCAAACUGCGUGGAAAAAUCAGGAACUCUGGGGAUUGAGUUUAAAGUUGUGAGUUAAUUGAAUGGGAACUCAGUUUUCCAUUCGAUUGUUCCCAUCGCAGU
.......(((((((((.........((((((........))))))............((((((((((((((......))))))))))))))...))).)))))) ( -32.80)
>DroEre_CAF1 74754 102 + 1
GCAGCAAACUGACUGGAAAA--AAGGAGUUGCGGGGAUUGAGACUGAAGUUCGGAGAUAAUUGAAUGAGAAUGCACUUAUCCAUUCGAUUGUUCUCGUUUUAGU
(((((...((..........--.))..)))))..........(((((((..((..((((((((((((.((.........))))))))))))))..))))))))) ( -24.90)
>DroYak_CAF1 74907 82 + 1
GCAGCCAACUGGUUGGAAAAAUAAGGAGUU----------------------GGAGAUAAUUGAAUAAGAAUUGAGUUAUCCAUUCGAUUGUUCUUAUAUAAGU
.(((((....))))).....((((((((((----------------------((((((((((.(((....))).)))))))..))))))..)))))))...... ( -19.70)
>consensus
GCAGCAAACUGCGUGGAAAAAUCAGGAACUCUGGGGAUUGAGUUUAAAGUUGUGAGUUAAUUGAAUGAGAACUCAGUUAUCCAUUCGAUUGUUCCCAUCGCAGU
.......((((((.((((.......((((((........))))))............((((((((((.((.........))))))))))))))))...)))))) (-15.51 = -16.64 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:23 2006