Locus 5930

Sequence ID 2R_DroMel_CAF1
Location 18,697,119 – 18,697,210
Length 91
Max. P 0.998322
window9514

overview

Window 4

Location 18,697,119 – 18,697,210
Length 91
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 77.54
Mean single sequence MFE -32.66
Consensus MFE -16.75
Energy contribution -16.63
Covariance contribution -0.12
Combinations/Pair 1.19
Mean z-score -3.01
Structure conservation index 0.51
SVM decision value 3.07
SVM RNA-class probability 0.998322
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18697119 91 + 20766785
--CAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCUGGUU-UGGCUGUGGUUCUGGUUCUGGA--------------GCCUGCAGUCCGGAGUCCGGAGUCU---
--(((((((....)))))))................((((((((((-(((((((((((((......)))--------------))).)))).)))))..))))).)))--- ( -35.00)
>DroSec_CAF1 60619 91 + 1
--CAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCUGGUU-UGGUUCUGGUUCUGGUUCUGGA--------------GCCUGCAGUCCGGAGUCCGGAGUCU---
--(((((((....))))))).((((...((((....))))...)))-)(..(((((((((((..(((..--------------.....))).)))))).)))))..).--- ( -32.30)
>DroSim_CAF1 61032 85 + 1
--CAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCUGGUU-UGGUUCU------GGUUCUGGA--------------GCCUGCACUCCGGAGUCCGGAGUCU---
--(((((((....))))))).((((...((((....))))...)))-)(..(((------(((((((((--------------(......)))))))).)))))..).--- ( -34.00)
>DroEre_CAF1 61649 100 + 1
--CAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCUGCUUUUGGUGCU------GGUUCUGAAGACCGAGGUCUGGAAUCUGGAAUCUGGAAUCUGCAGUCU---
--(((((((....))))))).................((.(((((((..(..((------((((((..((((....)))))))))).))...)..)))...)))).))--- ( -31.40)
>DroYak_CAF1 61558 92 + 1
GUCAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCU------GGUACU------GGUUCUGGAGAC-------UAAAGACUGGAGUCUGGAGUCGGGAAUCUGCA
.((((((((....))))))))......(((......((....------....))------((((((...(((-------(..((((....))))..)))).)))))).))) ( -30.60)
>consensus
__CAAGUGCGCAAGUACUUGAAAAUAAUGCUUUAUAAGGUCUGGUU_UGGUUCU______GGUUCUGGA______________GCCUGCAGUCCGGAGUCCGGAGUCU___
..(((((((....)))))))........................................(((((((((......................))))))).)).......... (-16.75 = -16.63 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:20 2006