| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,028,813 – 3,028,910 |
| Length | 97 |
| Max. P | 0.660053 |
| Location | 3,028,813 – 3,028,910 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.97 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -17.71 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3028813 97 + 20766785 ---AAUUUAAUCAAAUUCAGUUCUCUGCAUCCACAGCAUCUUUACCCUUUUGUGAAUUAUUACGAAGAAUGUUGUGGGUGCGCUUCAUGUGCGUAUUAAG ---...((((((..............(((((((((((((((((........((((....)))))))).)))))))))))))((.......))).))))). ( -25.20) >DroVir_CAF1 1940 98 + 1 AAUAAAGUG-GUAU-UUCAAAUGUCUGGAACGACAGUCUCGGUAGAUUUUUGAACGUUGUUCCGGACAAUGUUGUGCGUACGUUUCAUGUGCGAGUUGAG .........-((((-..((..(((((((((((((.((.((((.......))))))))))))))))))).))..))))((((((...))))))........ ( -30.10) >DroSec_CAF1 2462 97 + 1 ---AAUUUAAUCAAAUUCAGUUCUCUGCAUCCACAGCAUCUUUACCCUUUUGUGGAUUAUUACGAAGAAUGUUGUGGGUGCGCUUCAUAUGCGUAUUAAG ---...((((((..............(((((((((((((((((..((......))........)))).)))))))))))))((.......))).))))). ( -24.90) >DroSim_CAF1 2455 97 + 1 ---AAUUUAAUCAAAUUCAGUUCUCUGCAUCAACAACAUCUUUAGCCUUUUGUGGAUUAUUACGAAGAAUGUUGUGGGUGCGCUUCAUGUGCGUAUUAAG ---...((((((..............(((((.(((((((((((..((......))........)))).))))))).)))))((.......))).))))). ( -19.50) >DroEre_CAF1 2839 97 + 1 ---AAUUUUAGCAAAUUCAGUGCUCGGCAUCCACAGCGUCCGUACCCUUUUGUGAAUUGUUACGAAGAAUGUUGUGGGUGCGCUUCAUGUGCGUAUUAAG ---...............(((((...(((((((((((((.(.......(((((((....)))))))).)))))))))))))((.......)))))))... ( -26.71) >DroYak_CAF1 2585 97 + 1 ---AAUUUAAGCAAGUUCACUGCUCGGCAUCCGCAGCAUCUUUACCCUUUUGUGAAUUGUUACGAAGAAUGUUGUGGGUGCGCUUCAUGUGCGUAUUAAG ---......((((.......))))..(((((((((((((((((........((((....)))))))).)))))))))))))((.......))........ ( -26.20) >consensus ___AAUUUAAGCAAAUUCAGUUCUCUGCAUCCACAGCAUCUUUACCCUUUUGUGAAUUAUUACGAAGAAUGUUGUGGGUGCGCUUCAUGUGCGUAUUAAG ..........................(((((((((((((........((((((((....)))))))).)))))))))))))((.......))........ (-17.71 = -18.10 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:20 2006