Locus 5929

Sequence ID 2R_DroMel_CAF1
Location 18,696,652 – 18,696,757
Length 105
Max. P 0.525733
window9513

overview

Window 3

Location 18,696,652 – 18,696,757
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.77
Mean single sequence MFE -24.65
Consensus MFE -14.98
Energy contribution -15.46
Covariance contribution 0.47
Combinations/Pair 1.11
Mean z-score -1.50
Structure conservation index 0.61
SVM decision value -0.02
SVM RNA-class probability 0.525733
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18696652 105 + 20766785
---AACAUUAAAAUGCACUUGUUAACAAGUAAUUUGUUGG--GAAUGGCAGAUAUUUGCUUAUCGCAGCCAUGAAAUCA---------GUUUAGCCGACUA-AAAAAAGGUUGAAUAUUU
---..((...((((..(((((....))))).))))..)).--..(((((.((((......))))...))))).......---------((((((((.....-......)))))))).... ( -22.80)
>DroVir_CAF1 88719 108 + 1
GCUCGCAUUAAAAUGCACUUGUUAACAAGUAAUUUGUCCG-GCAAUGGCAGAUAUUUGCUUAUCGCAGUCAUGAAAUCA---------GUUCAGCGAAAUA-AA-AAAGGUUGAAUAUUU
(((.((((....))))(((((....))))).........)-)).(((((.((((......))))...))))).......---------(((((((......-..-....))))))).... ( -21.80)
>DroPse_CAF1 66578 104 + 1
---AACAUUAAAAUGCACUUGUUAACAAGUAAUUUGUUGGUGGAAUGGCAGAUAUUUGCUUAUCGCAGCCAUGAAAUCACGGUCUGCCGUUUAUCC-------------GUUGAAUAUUU
---.............(((((....))))).((((..(((..((((((((((...((((.....))))((.((....)).))))))))))))..))-------------)..)))).... ( -26.50)
>DroWil_CAF1 81828 109 + 1
UUUCGCAUUAAAAUGCACUUGUUAACAAGUAAUUUGUUGG-GGAAUGGCUGAUAUUUGCUUAUCGCCGUCAUGAAAUCA---------GUUCAAACGAAACCCA-GUAGGUUGAAUAUUU
.(((((((....))))(((((....)))))((((((((((-(((.((((.((((......)))))))))).((((....---------.)))).......))))-))))))))))..... ( -27.30)
>DroAna_CAF1 60426 101 + 1
---AACAUUAAAAUGCACUUGUUAACAAGUAAUUUGUUGG--AAAUGGCAGAUAUUUGCUUAUCGCAGCCAGG-GAUCA---------GUUUAGCCGGCCG-A---GAGGUUGAAUAUUU
---..((...((((..(((((....))))).))))..))(--(..((((.((((......))))...))))..-..)).---------((((((((.....-.---..)))))))).... ( -23.00)
>DroPer_CAF1 67358 104 + 1
---AACAUUAAAAUGCACUUGUUAACAAGUAAUUUGUUGGUGGAAUGGCAGAUAUUUGCUUAUCGCAGCCAUGAAAUCACGGUCUGCCGUUUAUCC-------------GUUGAAUAUUU
---.............(((((....))))).((((..(((..((((((((((...((((.....))))((.((....)).))))))))))))..))-------------)..)))).... ( -26.50)
>consensus
___AACAUUAAAAUGCACUUGUUAACAAGUAAUUUGUUGG_GGAAUGGCAGAUAUUUGCUUAUCGCAGCCAUGAAAUCA_________GUUUAGCCGA____A____AGGUUGAAUAUUU
.....((...((((..(((((....))))).))))..)).....(((((.((((......))))...)))))................(((((((..............))))))).... (-14.98 = -15.46 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:19 2006