Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,694,787 – 18,694,886 |
Length | 99 |
Max. P | 0.986269 |
Location | 18,694,787 – 18,694,886 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 93.11 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -22.38 |
Energy contribution | -22.82 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -2.02 |
Structure conservation index | 0.85 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18694787 99 + 20766785 CAGUGUUCGA-AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCAUGGG-AGGUGGAACAAGAAGUUU ...(((((..-.......(((((......)))))...((((((..(((((((.((((((.....)))))).)))).)).).)-))))))))))........ ( -26.90) >DroSec_CAF1 58266 100 + 1 CAGUGUUCGA-AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCACAGGUGGGUGGAACGAAAAGUUU ...(((((..-.......(((((......)))))...(((((...(((((((.((((((.....)))))).))))...)))..))))))))))........ ( -26.70) >DroSim_CAF1 58691 99 + 1 CAGUGUUCGA-AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGAAGGUGCACAGG-GUGUGGAACGAAAAGUUU ...(((((..-.......(((((......)))))..((((((((..((((((.((((((.....)))))).)))).))))))-)))).)))))........ ( -26.30) >DroEre_CAF1 59243 100 + 1 CAGUGUUCAAAAAUAAAGUCGGUGAAAAAGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAGGGAGCUGCACAGG-GGGUGGCACGAAAAGUUU ..((((............(((((......)))))...((((((.((......)).((((.(((.(.....).))).)))).)-)))))))))......... ( -24.10) >DroYak_CAF1 59060 100 + 1 CAGUGUUCAAAAAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGCUGCACAGG-CGGUGGAAUGAAAAGUUU ..((((((.......((((((((..((((..........)))).)))))))).......)))))).(((...(((((....)-))))...)))........ ( -27.64) >consensus CAGUGUUCGA_AAUAAAGUCGGUGAAAAGGCCGAAAACACUUUGACUGAUUUGUAUGUGGAGCACACAUGGAGGUGCACAGG_GGGUGGAACGAAAAGUUU ...(((((..........(((((......)))))...(((((...(((((((.((((((.....)))))).))))...)))..))))))))))........ (-22.38 = -22.82 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:18 2006