Locus 5925

Sequence ID 2R_DroMel_CAF1
Location 18,679,749 – 18,679,863
Length 114
Max. P 0.728967
window9507

overview

Window 7

Location 18,679,749 – 18,679,863
Length 114
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 76.46
Mean single sequence MFE -27.83
Consensus MFE -19.52
Energy contribution -19.40
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.70
SVM decision value 0.42
SVM RNA-class probability 0.728967
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18679749 114 - 20766785
CUUGAAUACCAUUUCCAAAUAC--CAAUUUCCAAGUCCACGAGACGUGCCUGAA-AAUAGCCAGAUUCGCAGCUCUGGCAUCCACCCCUUGGGGCCCAGUUGGCCAUUUAUUUUCGG
......................--..........(((.....)))....(((((-((((((((((........))))))..(((.....)))((((.....))))...))))))))) ( -26.90)
>DroSec_CAF1 43295 88 - 1
CUUGA----------------------------AGUCCACGAUACUUACCUGAA-AAUAGCCAGAUUCGCAGCUCUGGCUUCCACUCCUUGGGGCCCAGUUGGCCAUUUAUUUUCGG
.....----------------------------................(((((-((((((((((........))))))..(((.....)))((((.....))))...))))))))) ( -24.50)
>DroSim_CAF1 43652 88 - 1
CUUGA----------------------------AGUCCACGAUACUUACCUGAA-AAUAGCCAGAUUCGCAGCUCUGGCUUCCACCCCUUGGGGCCCAGUUGGCCAUUUAUUUUCGG
.....----------------------------................(((((-((((((((((........))))))..(((.....)))((((.....))))...))))))))) ( -24.50)
>DroEre_CAF1 44338 117 - 1
CUUGAAUCACAGCUUCAAGGCCUACAUUUUCCAAGUCCCCCAGACUUGCCUGGAAAACAGCCAGAUUCGCAGCUCUGGCUCUCACCCCUUGGGGCCCAGUUGGCCAUUUAUUUUCGG
.(((((.......)))))((((.........((((((.....)))))).((((.....(((((((........)))))))....(((....))).))))..))))............ ( -35.40)
>consensus
CUUGA____________________________AGUCCACGAGACUUACCUGAA_AAUAGCCAGAUUCGCAGCUCUGGCUUCCACCCCUUGGGGCCCAGUUGGCCAUUUAUUUUCGG
.................................................(((((.((((((((((........))))))..(((.....)))((((.....))))...))))))))) (-19.52 = -19.40 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:13 2006