Locus 5924

Sequence ID 2R_DroMel_CAF1
Location 18,679,111 – 18,679,206
Length 95
Max. P 0.538950
window9506

overview

Window 6

Location 18,679,111 – 18,679,206
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 75.94
Mean single sequence MFE -12.76
Consensus MFE -9.93
Energy contribution -9.05
Covariance contribution -0.88
Combinations/Pair 1.20
Mean z-score -1.07
Structure conservation index 0.78
SVM decision value 0.01
SVM RNA-class probability 0.538950
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18679111 95 + 20766785
UUUGAAUAAGUGAAUGAUUGCCUAAUGUUGGUACGUAAAUAACAAAAAAAGAACAUUUAAAUAAUUCGACUGUAGAAUCUGCAUACUGACAGAUU
.((((((...((((((..((((.......)))).((.....))..........))))))....))))))......(((((((.....).)))))) ( -14.20)
>DroSec_CAF1 42679 76 + 1
-------------------GCCUAAUGUUAGUAGGUAAAUAACAAAUGAAGAACAUUAAAAUAAUUCCACUGUAGUAUCUACAUACUGACAGAUU
-------------------......((((((((((.........((((.....)))).........))..(((((...))))))))))))).... ( -12.67)
>DroSim_CAF1 43043 76 + 1
-------------------UUUGAAUGUUAGUAGGUAUAUAACAAAUAAAGAACAUUUAAAUAAUUCCACUGUAGAAUCUGCAUACUGACAGAUU
-------------------((((((((((..((.((.....))...))...))))))))))..............(((((((.....).)))))) ( -11.40)
>consensus
___________________GCCUAAUGUUAGUAGGUAAAUAACAAAUAAAGAACAUUUAAAUAAUUCCACUGUAGAAUCUGCAUACUGACAGAUU
.........................((((((((((...............................))..(((((...))))))))))))).... ( -9.93 =  -9.05 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:12 2006