Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,677,459 – 18,677,562 |
Length | 103 |
Max. P | 0.615129 |
Location | 18,677,459 – 18,677,562 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 65.33 |
Mean single sequence MFE | -19.78 |
Consensus MFE | -4.27 |
Energy contribution | -4.39 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.25 |
Mean z-score | -2.35 |
Structure conservation index | 0.22 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18677459 103 + 20766785 GGGGAACUGCAGGAAAGUACAAAAUAAUAAUUUGAAU---AAUUACACCAAUUGUAUGUAUGUAUAUAAACAAACUAU-UGAGCUAGAAAACCAUGCUAGUUCCCAU .((((((((((((...((((((.....(((((.....---)))))......))))))((.(((......))).))...-............)).))).))))))).. ( -22.70) >DroSec_CAF1 41077 94 + 1 GGGGAACUACAGGAAAGUACAAAGUAAUAAUUUGAAUUUUAACUGCACUAAUUGUAU--------AUA----AACUAU-UAAGCUAGAAGACCAUGCUAGUUCCCAU .(((((((((((((((((.((((.......)))).)))))..((((..((((.((..--------...----.)).))-)).)).))....)).)).)))))))).. ( -20.60) >DroSim_CAF1 41398 94 + 1 GGGGAACUGCAGGGAAGUACAAAGUAAUAAUUUGAAUUUUAGCUGCAAUAAUUGUUU--------AUA----AACAAU-UAAGGUAGAACACCAUGCUAGUUCCCAU .(((((((((((((((((.((((.......)))).)))))..((((..((((((((.--------...----))))))-))..))))....)).))).))))))).. ( -31.30) >DroWil_CAF1 56434 86 + 1 GUGGAACUACACGGAGGG-----GGGAUAAAAUGAAAUUGAAAUGCAAAAAUUAUUAUU------AUA----UGCCAU-GUCCUUUCAAA-----ACUAAUUUCCAU (((......)))((((((-----((.(((.(((((((((..........)))).)))))------.))----).))..-..))))))...-----............ ( -14.40) >DroYak_CAF1 41467 93 + 1 GGGGAACUGCAGGAAAAUAAAAAAUAA--AUCCAAUUUUUAACCAUACUAAUUGUUA--------AUC----AUCUGUAUAAGCUAAAAAACCUAGUUAAUUUCCAU ((..(...(((((......((((((..--.....))))))....((((....((...--------..)----)...))))...........))).))...)..)).. ( -9.90) >consensus GGGGAACUGCAGGAAAGUACAAAGUAAUAAUUUGAAUUUUAACUGCACUAAUUGUUU________AUA____AACUAU_UAAGCUAGAAAACCAUGCUAGUUCCCAU .((((((((........................................................................................)))))))).. ( -4.27 = -4.39 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:11 2006