Locus 5922

Sequence ID 2R_DroMel_CAF1
Location 18,672,511 – 18,672,619
Length 108
Max. P 0.893632
window9504

overview

Window 4

Location 18,672,511 – 18,672,619
Length 108
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.76
Mean single sequence MFE -51.40
Consensus MFE -31.80
Energy contribution -31.30
Covariance contribution -0.50
Combinations/Pair 1.30
Mean z-score -2.23
Structure conservation index 0.62
SVM decision value 0.98
SVM RNA-class probability 0.893632
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18672511 108 - 20766785
ACCCGUUUACACCGCCCCGCCGCCCCUUCUGUCCACAAGGACGCCCCCGAAUAUCUACACCCGCAUCCCGGGUCGCGGGG---GCGGUGGAGGCGGAGCAACGGUCACGGC
..(((((....((((((((((((((((...((((....))))((.((((...................))))..))))))---))))))).)))))...)))))....... ( -54.11)
>DroPse_CAF1 37753 108 - 1
UCCCGUCUACACCGCCCCGCCGCCGCUGCUCUCCACCCGCACCCCGCCGAAUAUCUACACCCGUAUUCCGGGCCGGGGAG---UCGGCGGUGGUGGUGGCAUGCCCGGAGG
..(((..((..((((((((((((((..(((((((.(((((.....)).((((((........)))))).)))..))))))---)))))))))).)))))..))..)))... ( -53.90)
>DroEre_CAF1 35621 108 - 1
ACCCGUUUACACCGCCCCGCCGCCCCUUCUGUCCACAAGGACGCCCCCGAACAUCUACACCCGCAUCCCGGGCCGCGGGG---GUGGUGGGGGCGGAGCAACGGUCACGGC
..((((....((((.....((((((((.((((((....))))(((((((..........((((.....))))...)))))---)))).)))))))).....)))).)))). ( -51.82)
>DroYak_CAF1 36556 108 - 1
ACCCGUUUACACCGCCCCGCCGCCCCUGCUGUCCACGAGGACGCCCCCGAACAUCUACACCCGCAUCCCGGGCCGCGGGA---GCGGUGGGGGCGGAGCAACGGUCACGGC
..(((((....((((((((((((.(((((.((((....))))((((..((...............))..)))).))))).---))))).)))))))...)))))....... ( -51.96)
>DroAna_CAF1 35914 109 - 1
CCCCAUUUACACUGCCCCGCCGCCCCUGCUAUCCACAAGGACUCCCCCCAACAUCUACACCCGCAUCCCGGGUCGAGGAGGAAGCGGUGGAGCUGGUGGUGCAGUC--GGA
.........((((((.((((((((((((((.(((....((.......))....(((.((((((.....))))).).))))))))))).)).)).))))).))))).--).. ( -42.70)
>DroPer_CAF1 38453 108 - 1
UCCCGUCUACACCGCCCCGCCGCCGCUGCUCUCCACCCGCACCCCGCCGAAUAUCUACACCCGUAUUCCGGGCCGGGGAG---UCGGCGGUGGUGGUGGCAUGCCCGGAGG
..(((..((..((((((((((((((..(((((((.(((((.....)).((((((........)))))).)))..))))))---)))))))))).)))))..))..)))... ( -53.90)
>consensus
ACCCGUUUACACCGCCCCGCCGCCCCUGCUGUCCACAAGGACGCCCCCGAACAUCUACACCCGCAUCCCGGGCCGCGGAG___GCGGUGGAGGCGGAGCAACGGUCACGGC
..((((...(.((((((((((((.....((((......((.....))............((((.....))))..)))).....))))))).))))).)..))))....... (-31.80 = -31.30 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:10 2006