Locus 5921

Sequence ID 2R_DroMel_CAF1
Location 18,672,222 – 18,672,336
Length 114
Max. P 0.572246
window9503

overview

Window 3

Location 18,672,222 – 18,672,336
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 82.55
Mean single sequence MFE -48.65
Consensus MFE -30.45
Energy contribution -31.73
Covariance contribution 1.28
Combinations/Pair 1.37
Mean z-score -1.98
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.572246
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18672222 114 - 20766785
ACGCUGCCCCACCCGGGA---AGCCUGCAUGUGGGCGGCAUUUCGGCGGCCCUGACCAGCUCGGUGACCAGCGGAAACAUCACCAUCGGAGCGGCCCAGUCGCUGCUGACGUCGCCG
..(((((((((..((((.---..))))..)).)))))))....(((((((.((((...(((.(....).)))(....).......))))((((((......))))))...))))))) ( -51.50)
>DroVir_CAF1 62196 114 - 1
ACAUUGCCGCAUCCAGGC---AGCCUGCAUUUGGGCGGCGUUUCGGCAGCGAUGACCAGCUCAGUGACCAGCGGUAAUAUAACCAUUGGAGCUGCCCAAUCGCUGCUCACCUCGCCA
....((((.......)))---)((((......))))((((....(((((((((...((((((.((.....))(((......)))....))))))....))))))))).....)))). ( -47.90)
>DroWil_CAF1 50490 114 - 1
ACUCUACCACAUCCGGGU---AGCCUACAUGCGGGUGGAAUCUCAGCCGCUUUGACCAGCUCGGUGACCAGCGGGAACAUCACCAUUGGAGCUGCCCAAUCACUGUUGACUUCACCC
..............((((---(((...((.((((.(((....))).))))..)).((((((.(....).)))((........))..))).))))))).................... ( -35.40)
>DroMoj_CAF1 70242 114 - 1
ACGCUGCCGCAUCCGGGC---AGCCUGCACUUGGGCGGCGUCUCGGCAGCGAUGACCAGCUCGGUGACCAGCGGCAACAUAACCAUCGGAGCUGCCCAGUCGCUGCUCACCUCGCCG
..((((((.......)))---)))..((...(((((((((.((.((((((..(((...(((.(....).)))(....).......)))..)))))).)).)))))))))....)).. ( -53.40)
>DroAna_CAF1 35623 117 - 1
ACACUGCCGCACCCGGGCAGCAGCCUGCAUGUGGGCGGAAUCUCGGCCGCCCUAACGAGCUCGGUGACCAGCGGAAAUAUCACCAUCGGAGCGGCCCAGUCGCUGCUCACCUCGCCC
..............((((.((.....))..((((((((...((.((((((((......(((.(....).)))((........))...)).)))))).))...))))))))...)))) ( -48.00)
>DroPer_CAF1 38161 114 - 1
ACGCUGCCCCAUCCGGGC---AGCCUCCACACGAGCGGCAUCUCGGCGGCGCUGACCAGCUCGGUGACCAGCGGCAACAUCACCAUCGGCGCCGCCCAAUCGCUGCUGACGUCGCCC
..(((((((.....))))---)))......(((((((((.....(((((((((((...(((.(....).)))(....).......))))))))))).....))))))..)))..... ( -55.70)
>consensus
ACGCUGCCGCAUCCGGGC___AGCCUGCAUGUGGGCGGCAUCUCGGCAGCGCUGACCAGCUCGGUGACCAGCGGAAACAUCACCAUCGGAGCUGCCCAAUCGCUGCUCACCUCGCCC
..((((((.(((.(((((....)))))...))))))))).....((((((.((((...(((.(....).)))((........)).)))).))))))..................... (-30.45 = -31.73 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:09 2006