| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,024,572 – 3,024,665 |
| Length | 93 |
| Max. P | 0.774521 |
| Location | 3,024,572 – 3,024,665 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 85.13 |
| Mean single sequence MFE | -18.22 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3024572 93 - 20766785 UACAUAUAAAAUAUUUUCUAAAAUUGAGAUGAUUUCGUUUCAAUGGAAUUUCCGCGGGUAUCUUCCCAACACUGACCAUCCGGUGCUUAUCGA ......................(((((((((....)))))))))((.....))..(((......)))..(((((......)))))........ ( -19.20) >DroSec_CAF1 3038 93 - 1 UACAUAUAAAAUUUUUUCUAACAUUGAGACGAUUUCUUUUCAAUGGAAUUUCCGCGGGUAACUUCCCAACACUGACCAUCCGGUGUUUAUCGA .....................((((((((.(....).))))))))((........(((......)))(((((((......)))))))..)).. ( -19.40) >DroSim_CAF1 3081 92 - 1 UACAUAUAAAAUUUUUUAUAACAUUGAGACGAUUUCUUUUCAAUGGAAUUU-CGCGGGUAACUUCCCAACACUGACCAUCCGGUGUUUAUCGA ....((((((....)))))).((((((((.(....).)))))))).....(-((.(((......)))(((((((......)))))))...))) ( -20.50) >DroYak_CAF1 3027 91 - 1 -AUCUAUAAAAUAUUUUCCAACAUUGACUAAAUUUUAUAUCAAUGGA-UUUCCCCGGGUGAUUUCCCAACACUUAUAAGCAGGUGUUUAUCGA -....................((((((............))))))((-(......(((......)))(((((((......))))))).))).. ( -13.80) >consensus UACAUAUAAAAUAUUUUCUAACAUUGAGACGAUUUCUUUUCAAUGGAAUUUCCGCGGGUAACUUCCCAACACUGACCAUCCGGUGUUUAUCGA .....................((((((((.(....).))))))))..........(((......)))(((((((......)))))))...... (-15.60 = -15.85 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:18 2006