Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,664,159 – 18,664,257 |
Length | 98 |
Max. P | 0.957775 |
Location | 18,664,159 – 18,664,257 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.53 |
Mean single sequence MFE | -18.62 |
Consensus MFE | -9.16 |
Energy contribution | -11.87 |
Covariance contribution | 2.70 |
Combinations/Pair | 1.28 |
Mean z-score | -3.08 |
Structure conservation index | 0.49 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18664159 98 + 20766785 CCAUAGAUUAUUAAUGCAGAAAACCCUUCCGCAUUC-CCC----UCAACAGACAAAACAAAUCCUAAUUUGUCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG ..(((((((((((((((.(((.....))).))))).-...----((((((((((((...........))))))))))))......))))))))))........ ( -24.60) >DroSec_CAF1 27632 97 + 1 GCAUAUAUUACUUAUGCAGAAAACCCUUCCGU-UUC-CCC----UCGACAGACAAAACAAAUCCUAAUUUGCCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG (((...((((.(((.((((.((((......))-)).-...----(((((((.((((...........)))).)))))))))))))).)))).....))).... ( -17.90) >DroSim_CAF1 28105 95 + 1 C--UAGAUUACUUAUGCAGAAAACCCUUCCGU-UUC-CCC----UCGACAGACAAAACAAAUCCUAAUUUGUCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG .--(((((((.(((.((((.((((......))-)).-...----((((((((((((...........))))))))))))))))))).)))))))......... ( -23.30) >DroEre_CAF1 27504 96 + 1 CCAUGGAUUAUUUAUGCAGAAUACCCUUCCGU-UC--CCC----UCGACACGCAAAACAAAUCCUAAUUUGUCUGUAGACUCCUAAAUAAUUUAUUUGCCAAG ..((((((((((((((((((..........((-(.--...----..)))........(((((....)))))))))))......))))))))))))........ ( -12.80) >DroYak_CAF1 28215 101 + 1 CCAUAGAUUAUUUAUGCAGAAUACCCUUUCAU-UUUCCCCCCGUCCGACAGGCAAAACAAAUCCUAAU-UGUCUGUUGACUCCUAAAUAAUUUAUUUGCCAAG ..((((((((((((....(((......)))..-.........(((.(((((((((............)-)))))))))))...))))))))))))........ ( -20.20) >DroPer_CAF1 33219 96 + 1 UCAUUCAUAAUUUAUUCACAAUUCCAU-CUAU-UUC-CAU----UCGACCCGAAGGAAAAUUUCUAUUUUCUCUGUUGACUUUUGCAUAAUUUAUGCCUGAAG (((..(((((.((((.((.........-...(-(((-(.(----(((...)))))))))..........((......))....)).)))).)))))..))).. ( -12.90) >consensus CCAUAGAUUAUUUAUGCAGAAAACCCUUCCGU_UUC_CCC____UCGACAGACAAAACAAAUCCUAAUUUGUCUGUUGACUGCUAAAUAAUUUAUUUGCCAAG ..((((((((((((.((.(((.....))).))............((((((((((((...........))))))))))))....))))))))))))........ ( -9.16 = -11.87 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:03 2006