Locus 5917

Sequence ID 2R_DroMel_CAF1
Location 18,661,791 – 18,661,899
Length 108
Max. P 0.566691
window9496

overview

Window 6

Location 18,661,791 – 18,661,899
Length 108
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.73
Mean single sequence MFE -26.06
Consensus MFE -20.48
Energy contribution -20.60
Covariance contribution 0.12
Combinations/Pair 1.16
Mean z-score -1.47
Structure conservation index 0.79
SVM decision value 0.07
SVM RNA-class probability 0.566691
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18661791 108 - 20766785
UAACUGGGCGAUAAUCGGCAUUUGAUUUGGUGCCGACGAAAACUUUUCUUAAGAGUCUACCUCUAACCUAGGCCC--GGGUUUCCCCCACAUUUU---------CCGCAUUUUCUCUCC
.....((((.....((((((((......))))))))...............((((.....)))).......))))--(((.....))).......---------............... ( -26.50)
>DroSec_CAF1 25324 108 - 1
UAACUGGGCGAUAAUCGGCAUUUGAUUUGGUGCCGGCGAAAACUUUUCUUAAGAGUCUACCUCUAUCCUGGGCUC--GGGUUUCCCCCAUAUUUU---------CCGCAUUUUCUCUCC
.....(((.((.((((((((((......)))))))(((((((..........(((((((.........)))))))--(((.....)))...))))---------.)))))).)).))). ( -28.30)
>DroSim_CAF1 25788 108 - 1
UAACUGGGCGAUAAUCGGCAUUUGAUUUGGUGCCGGCGAAAACUUUUCUUAAGAGUCUACCUCUAUCCUACGUCC--GGGUUUCCCCCACAUUUU---------CCGCAUUUUCUCUCC
.....(((((....((((((((......))))))))...............((((.....))))......)))))--(((.....))).......---------............... ( -25.20)
>DroEre_CAF1 25201 108 - 1
UAACUGGGCGAUAAUCGGCAUUUGAUUUGGUGCCGGCGAAAACUUUUCUUAAGAGUUUACCUCUAUCCUCGGCCC--GCUUUUCCCCCACAUUUU---------CCGCAUUUUCUCUCC
....((((.((....(((((((......)))))))(((.(((((((.....))))))).((.........))..)--))...)).))))......---------............... ( -22.50)
>DroYak_CAF1 25706 119 - 1
UAACUGGGCGAUAAUCGGCAUUUGAUUUGGUGCCGGCGAAAACUUUUCUUAAGAGUCUACCUCUAUCCUAGGCCCUAGGUUUUCCCCCACAUUUUCCGAAUUUUCCGCAUUUGCUCUCC
.....((((((....(((((((......)))))))(((.(((...(((...((((.....))))..(((((...)))))..................))).))).)))..))))))... ( -27.80)
>consensus
UAACUGGGCGAUAAUCGGCAUUUGAUUUGGUGCCGGCGAAAACUUUUCUUAAGAGUCUACCUCUAUCCUAGGCCC__GGGUUUCCCCCACAUUUU_________CCGCAUUUUCUCUCC
.....((((.....((((((((......))))))))...............((((.....)))).......))))..(((.....)))............................... (-20.48 = -20.60 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:02 2006