| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,644,846 – 18,644,942 |
| Length | 96 |
| Max. P | 0.689895 |
| Location | 18,644,846 – 18,644,942 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -13.92 |
| Energy contribution | -14.26 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18644846 96 + 20766785 AAACUGUUGGCAAUGCAACUUUAUUUGCAG-GAAACCAUUUCGGU-UUGGUUGCAUCAUUGCGAAGGCUUAAC------------CCCCAUCGUCAGCCUACUUUCC---UAA .....((((((..(((((......)))))(-((((((.....)))-))(((((.......((....)).))))------------).))...)))))).........---... ( -21.90) >DroSec_CAF1 8477 96 + 1 AAACUGUUGGCAAUGCAACUUUAUUUGUAG-GAAACCAUUUCGGU-UUGGUUGCAUCAUUGCGAAGGCUCAAC------------CCCCAUCGCCAGCCUACUUUCC---CAA .....((((((.((((((((..(((.((.(-....).))...)))-..))))))))....((....)).....------------.......)))))).........---... ( -24.50) >DroSim_CAF1 8487 96 + 1 AAACUGUUGGCAAUGCAACUUUAUUUGUAG-GAAACCAUUUCGGU-UUGGUUGCAUCAUUGCGAAGGCUCAAC------------CCCCAUCGCCAGCCUACUUUCC---CAA .....((((((.((((((((..(((.((.(-....).))...)))-..))))))))....((....)).....------------.......)))))).........---... ( -24.50) >DroEre_CAF1 8435 96 + 1 AAAUUGUUGGCUAUGCAACUUUAUUUGUAG-AAAGCCAUUUCGGU-UUGGUUGCAUCAUUGCGAAGGCUUAAC------------CCCCAUUGGCCGCCUACUUUCC---UAA ((((((.(((((.(((((......))))).-..)))))...))))-))(((((((....))))..((((....------------.......)))))))........---... ( -22.60) >DroYak_CAF1 8822 83 + 1 AAACUGUUGGCUAUGCAACUUUAUU---------------UCGGUUUUGGUUGCAUCAUUGCGAAGGCUUAAC------------CCCCAUUGCCUGCCUACUUCCC---UGA .....((.(((.((((((((..(..---------------.....)..))))))))........((((.....------------.......))))))).)).....---... ( -18.00) >DroPer_CAF1 12912 108 + 1 AAUUUGUUGGCCAUGCAACUUUUGUUUUGGCCAAUCCAUUUCCGU-UUGGUUACAUCAUUGCAAUGGCUUAUAGCAUUCUCUGCGCCCCACAA---GCC-CCUCACCCAGCAA ...(((((((...(((((....(((...((((((...........-)))))))))...)))))..(((((...(((.....))).......))---)))-......))))))) ( -23.50) >consensus AAACUGUUGGCAAUGCAACUUUAUUUGUAG_GAAACCAUUUCGGU_UUGGUUGCAUCAUUGCGAAGGCUUAAC____________CCCCAUCGCCAGCCUACUUUCC___CAA .....((.(((.((((((((............................))))))))....((....))............................))).))........... (-13.92 = -14.26 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:55 2006