| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,637,881 – 18,638,001 |
| Length | 120 |
| Max. P | 0.709734 |
| Location | 18,637,881 – 18,638,001 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.06 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -23.68 |
| Energy contribution | -23.46 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18637881 120 - 20766785 GGAGCUAGGUUAGCAAAUGUACAAUUAGUAUCUUUGCUGCAUACACGAAACUAAUUGAUGGUGUCAAUUACUAAACCAUUUAAAUGUGUGUUAUGCAAGUUAUAACAAAAUGAAAUGAAA ........(((((((((.((((.....)))).)))))((((((((((.........((((((............))))))......)))).)))))).....)))).............. ( -25.06) >DroSec_CAF1 1551 115 - 1 GGCGCUACACCAGCAAAUGUACAAUUAGUAUCUUUGCUGCAUACACGAACCUAAUUGAUGGUGUCAAUUACUAAACCGUUUAAAUGUGUGUUAUGCAAGUUAUAACAAAAUGA-----AA (((........((((((.((((.....)))).))))))(((((((((.........((((((............))))))......)))).)))))..)))............-----.. ( -23.46) >DroSim_CAF1 1545 120 - 1 GGCGCUACACCAGCAAAUGUACAAUUAGUAUCUUUGCUGCAUACACGAACCUAAUUGAUGGUGUCAAUUACUAAACCGUUUAAAUGUGUGUUAUGCAAGUUAUAACAAAAUGAAACGAAA (((((((...(((((((.((((.....)))).)))))))......(((......))).)))))))...........(((((.......(((((((.....))))))).....)))))... ( -27.00) >consensus GGCGCUACACCAGCAAAUGUACAAUUAGUAUCUUUGCUGCAUACACGAACCUAAUUGAUGGUGUCAAUUACUAAACCGUUUAAAUGUGUGUUAUGCAAGUUAUAACAAAAUGAAA_GAAA ...(((.....((((((.((((.....)))).))))))(((((((((.........((((((............))))))......)))).))))).))).................... (-23.68 = -23.46 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:54 2006