| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,637,593 – 18,637,710 |
| Length | 117 |
| Max. P | 0.528900 |
| Location | 18,637,593 – 18,637,710 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.74 |
| Mean single sequence MFE | -39.42 |
| Consensus MFE | -11.09 |
| Energy contribution | -11.12 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.28 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18637593 117 + 20766785 CAUAAACGUACAUGGGCACCUUUUCGUCCAGUGU--CUGCGAGUUCAG-CACGUUUCUGCCCACAUUACGGGCUAUGGUAGUGGCCCAGUUUCCCGACCCAAUGAUGCAAAUCAUUAUCU ...(((((((..(((((((......))...(((.--(((......)))-)))......)))))...)))(((((((....))))))).))))........((((((....)))))).... ( -30.40) >DroPse_CAF1 2200 120 + 1 CAUACACAUACAUGUAGACCUUCGGCUCCAUUGUGUUGGCCAUUGCGGCCACAUUCCUGCCCACAUUUCGGGCUAUGGUCGUGGCCCAAUUGCCAGAUCCAAUGAUGCAUGUCGAUAUCU .........(((((((((.(....).))(((((..(((((.((((.((((((...((.((((.......))))...))..)))))))))).)))))...))))).)))))))........ ( -46.20) >DroGri_CAF1 19723 117 + 1 CGUACACAUACAUAUUAACCUUGGGCUCCAAUAG--CUGUGACCGGGC-CACAUUGUUGCCCACAUUCCUGGCUAUAGUCGUGGCCCAAUUGCCCGAUCCAAUAAUGCAGACGUUCAAAC (((...(((...((((....((((((((((....--.)).))..((((-((((((((.(((.........))).))))).)))))))....))))))...)))))))...)))....... ( -32.40) >DroMoj_CAF1 24284 117 + 1 CGUAGACGUACAUAUUCACCUUGGGCUCCAUUAG--CUGCGAGUUGGC-CACGUUGUUGCCCACAUUGCGGGCAAUCGUCGUCGCCCAGUUGCCAGAGCCGAUAAUGCAGACGUUCAGCC .((.(((((...((((.....(.(((((...(((--(((......(((-.(((..(((((((.......)))))))...))).)))))))))...))))).).))))...)))))..)). ( -35.40) >DroAna_CAF1 1230 117 + 1 CGUACACGUACAUGGGCACCUUCUCGUCCAGGGU--CGAGUGGUUGGC-CACGUUCCUGCCCACGUUGCGGGCUAUGGUGGUGGCCCAGUUGCCCGAUCCGAUGAUGCAAAUCAUAAUCU .(((....))).(((((........)))))((((--((.((..(((((-(((...((.((((.......))))...))..)))).))))..)).)))))).(((((....)))))..... ( -45.90) >DroPer_CAF1 2225 120 + 1 CAUACACAUACAUGUAGACCUUCGGCUCCAUUGUGUUGGCCAUUGCGGCCACAUUCCUGCCCACAUUUCGGGCUAUGGUCGUGGCCCAAUUGCCAGAUCCAAUGAUGCAUGUCGAUAUCU .........(((((((((.(....).))(((((..(((((.((((.((((((...((.((((.......))))...))..)))))))))).)))))...))))).)))))))........ ( -46.20) >consensus CAUACACAUACAUGUACACCUUCGGCUCCAUUGU__CGGCGAGUGCGC_CACAUUCCUGCCCACAUUGCGGGCUAUGGUCGUGGCCCAAUUGCCAGAUCCAAUGAUGCAAAUCAUUAUCU .........................................................(((.........(((((((....))))))).((((.......))))...)))........... (-11.09 = -11.12 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:53 2006