Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,014,033 – 3,014,153 |
Length | 120 |
Max. P | 0.656964 |
Location | 3,014,033 – 3,014,153 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -40.93 |
Consensus MFE | -24.02 |
Energy contribution | -24.33 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.30 |
Mean z-score | -2.12 |
Structure conservation index | 0.59 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3014033 120 + 20766785 UAGCAUUGAGGCGGCUCAGGCGGCUCGAGACGCUCUGGCCAAGCACAUCUAUGCGAAACUGUUUCAGUAUAUAGUCGGUGUGCUGAACAAGAGCCUCAACAACGGUAGCAAGCAGUGCAG ..((((((..(((((((....((((.(((...))).)))).((((((((.((.....((((...)))).....)).))))))))......)))))...((....)).))...)))))).. ( -42.60) >DroVir_CAF1 5754 120 + 1 CAACAUGGAGAUGGCGAUGGCCGCAAGGGAUGCUUUGGCCAAGCACAUCUAUGCGAAGCUCUUUCAGUAUAUUGUCAAUGUGCUGAACAAGAGUCUAUUUAACGGUAGCAAACAGUGCAG ........(((((((..((((((.(((.....))))))))).)).))))).((((..(((((((((((((((.....)))))))))..))))))((((......)))).......)))). ( -37.50) >DroGri_CAF1 5976 120 + 1 CAACAUCGAGAUGGCAAUGGCCGCUCGCGAUGCUCUGGCCAAGCACAUCUAUGCGAAGCUCUUUCAGUAUAUUGUCGGUGUGCUGAACAAGAGCUUGUAUAACGGUAGCAAACAGUGCAG ......((((.((((....))))))))...(((.(((.....((((...(((((.(((((((((((((((((.....)))))))))..)))))))))))))...)).))...))).))). ( -43.90) >DroWil_CAF1 5667 120 + 1 CAAUAUUGAGGCUGCCGAAGCGGCACGUGAUGCUUUGGCCAAGCAUCUCUAUGCCAAGCUCUUUCAAUAUAUUGUGGGAGUUCUGAACAAGAGUCUCAAUAACGGUAGCAAACAGUGCAG ...(((((..(((((((.(((((((...(((((((.....)))))))....))))..)))..............(((((.((((.....)))))))))....)))))))...)))))... ( -38.20) >DroMoj_CAF1 5806 120 + 1 CAACAAAGAGAUGGCGAUGGCGGCGCGCGAUGCGCUGGCCAAGCACAUAUACGCGAAGCUAUUUCAGUAUAUAGUCAAUGUGCUGAAUAAGAGCUUGCAUAACGGUAGCAAACAGUGCAG ..........(((((..(((((((((.....))))).)))).)).)))....((.(((((..((((((((((.....))))))))))....))))))).........(((.....))).. ( -39.20) >DroAna_CAF1 5625 120 + 1 CAGCAUUGAGGCGGCGGAGGCGGCACGUGACGCCCUGGCCAAGCAUAUUUACGCGAAACUGUUCCAGUACAUCGUUGGUGUGCUGAACAAGAGCCUCAAUAACGGUAGCAAGCAGUGCAG ....(((((((((((.(.((((........)))).).)))..((........)).....(((((.(((((((.....))))))))))))...)))))))).......(((.....))).. ( -44.20) >consensus CAACAUUGAGACGGCGAAGGCGGCACGCGAUGCUCUGGCCAAGCACAUCUAUGCGAAGCUCUUUCAGUAUAUUGUCGGUGUGCUGAACAAGAGCCUCAAUAACGGUAGCAAACAGUGCAG ............(((.(.((((........)))).).)))..((((.....(((....((..((((((((((.....))))))))))..)).(((........))).)))....)))).. (-24.02 = -24.33 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:17 2006