Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,637,380 – 18,637,479 |
Length | 99 |
Max. P | 0.500000 |
Location | 18,637,380 – 18,637,479 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.09 |
Mean single sequence MFE | -26.12 |
Consensus MFE | -14.47 |
Energy contribution | -13.92 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.44 |
Mean z-score | -1.61 |
Structure conservation index | 0.55 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18637380 99 - 20766785 UGACGAUGUGU-CCGG--UUUUCUAAUAUUUCGAUUCUACAUUUGACAGGUGGCCGUGGAUGAUAUCGUGACUACAGCUCGAGAUGCGGACAUUAUAAUAUU .......((((-(((.--........((((((((.....((((.....))))((.(((((((....)))..)))).)))))))))))))))))......... ( -21.40) >DroSec_CAF1 1053 101 - 1 UGACAAUGUGU-CCAAUAUUUUCCAAUAUUUCCAUCCUACACUUGACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUCGAGAUGCGGACAUUAUAAUAUU .......((((-((((((((....))))))..(((((..((((.....))))(((((((............)))))))..).)))).))))))......... ( -26.50) >DroSim_CAF1 1049 99 - 1 UGACAAUGUGU-CCAG--UUUUCCAAUAUUUCGAUCCUACACUUGACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUCGAGAUGCGGACAUUAUAAUAUU .......((((-((.(--.....)..((((((((.....((((.....))))(((((((............))))))))))))))).))))))......... ( -28.50) >DroEre_CAF1 1017 98 - 1 UAACGAUGUGU-CAAG---UUUCUUAUAUUUCAAUUCCACAUCCUUCAGGUGGCCGUGGAUGAUAUUGUGACCACGGCAAGAGAUGCUGACAUCAUUAUAUU ....(((((((-((.(---((((((..............((((.....))))(((((((............))))))))))))))..))))).))))..... ( -29.70) >DroWil_CAF1 1007 100 - 1 -GACAAUUUGCUGCUG-UUUCUUUAAUUAAUAGCUCCCUCUGUUUUUAGGUGGCUGUUGAUGAUGUGGUUAAAACAGCUAGAGAUGCUGACAUUUUAAUAUU -...........((((-(((((...(((((((((..(((........)))..))))))))).....))...)))))))..((((((....))))))...... ( -24.30) >DroYak_CAF1 1010 101 - 1 UAACGAUGUCU-CUGGGCUUUUGUAAUAUUUCGAUUUCACAUUUAACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUAGAGAUGCAGACAUCAUAAUAUU ....(((((((-....((....))..(((((((....)............(((((((((............))))))))))))))).)))))))........ ( -26.30) >consensus UGACAAUGUGU_CCAG__UUUUCUAAUAUUUCGAUCCCACAUUUGACAGGUGGCCGUGGAUGAUAUUGUGACCACGGCUAGAGAUGCGGACAUUAUAAUAUU ....(((((..............................((((.....))))(((((((............)))))))...........)))))........ (-14.47 = -13.92 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:52 2006