| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,634,547 – 18,634,655 |
| Length | 108 |
| Max. P | 0.669633 |
| Location | 18,634,547 – 18,634,655 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.53 |
| Mean single sequence MFE | -25.86 |
| Consensus MFE | -9.69 |
| Energy contribution | -11.58 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18634547 108 + 20766785 UGAUU------UUUAG------CCGGCAUUUUGCACCUGUACGCAGGUAGCACGUAAGCUGAAUAUUUGCUAUAUGCUUGCGUAAACUGCAAAUCUGAAAUGAACUAAUAAAGCAAUUGA ....(------(((((------...(((.((((((((((....))))).))((((((((...((((.....))))))))))))))).)))....)))))).................... ( -26.00) >DroSec_CAF1 45214 83 + 1 UGGUU------UUUAG------CCGGCAUUUUGCACCUGUACGCAGGCAGCACGUAAGCUGAAUAUUUGCUGUAUG-------AAA----AUAUUUGAAAU--------------AUUGA ..(((------((((.------.(((((.......((((....))))((((......))))......)))))..))-------)))----)).........--------------..... ( -21.00) >DroSim_CAF1 41630 108 + 1 UGAUU------UUUAG------CCGGCAUUUUGCACCUGUACGCAGGCAGCACGUAAGCUGAAUAUUUGCUGUAUGCUUGCGUAAACUGCAAAUCUGAAAUGAACUAAUAAAGCAAUUGA .....------((((.------.(((...((((((....(((((((((((((.(((((.......)))))))).))))))))))...)))))).)))...))))................ ( -27.20) >DroEre_CAF1 47529 113 + 1 UGAUUUUCAUU-UUAG------CUGGCAUUUUGCACCUGUACGCAGGCAGCACGUAAGCUGAAUAUUUGCUGUAUGCUUGCGUAAACUGCAAAUCUGAAAUGAACUAAUAAAGCAAUUGA .....((((((-((((------.......((((((....(((((((((((((.(((((.......)))))))).))))))))))...)))))).))))))))))................ ( -32.50) >DroAna_CAF1 50645 92 + 1 ---UU------UUUAGAGACACCCGAGA---GGCAGCUG--CCCCUGCAGCACGUAAGCGGCAUAUUUGC-----------CUAAAUAGAAA---CGAACUAAACUAAUAGAGUCCUGAA ---..------(((((.(((.......(---((((((((--(....))))).((....)).......)))-----------)).........---....(((......))).)))))))) ( -22.60) >consensus UGAUU______UUUAG______CCGGCAUUUUGCACCUGUACGCAGGCAGCACGUAAGCUGAAUAUUUGCUGUAUGCUUGCGUAAACUGCAAAUCUGAAAUGAACUAAUAAAGCAAUUGA ........................(((((...(((((((....))))((((......))))......)))...))))).......................................... ( -9.69 = -11.58 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:51 2006