Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,628,855 – 18,628,945 |
Length | 90 |
Max. P | 0.797128 |
Location | 18,628,855 – 18,628,945 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 91.19 |
Mean single sequence MFE | -25.06 |
Consensus MFE | -18.90 |
Energy contribution | -18.94 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.99 |
Structure conservation index | 0.75 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.797128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18628855 90 + 20766785 UCUCGAUUAAUCCCUUC-CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGGAAAGCUGUUUUUCCAGCAAUUGUAAAUCGAG .(((((((.....((.(-((.((((.....))))))).)).........((-(.(((((((((((....))))))))))).))).))))))) ( -31.30) >DroSec_CAF1 39516 90 + 1 CUUCGAUUAAUCCCUUC-CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGCAAAGCUGUUUUUCCAGCAAUUUUAAAUAGAG .................-.((.(.(((((((((((((((((((.......)-)))))))...))).))))))))).)).............. ( -18.90) >DroSim_CAF1 35925 90 + 1 UUUCGAUUAAUCCCUUC-CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGCAAAGCUGUUUUUCCAGCAAUUGUAAAUCGAG ..((((((.........-.((((..((..((.....)).(((....)))..-.))..))))...((((......)))).......)))))). ( -23.80) >DroEre_CAF1 41709 89 + 1 AUUCGAUUAAUCCUUUC-CGCAGUGG-AAGCACUUGGCAGAUGAGAAUCGC-AUUUGCUGGAAAACUAUUUUUCUAGCAAUUGUAAAACGAG ..((((((.(((....(-((.((((.-...)))))))..)))...))))((-(.(((((((((((....))))))))))).))).....)). ( -26.40) >DroYak_CAF1 38434 92 + 1 AUUCGAUUAAUCCUUUCCCGUCGUGAAAAGCACUUGGCAGAUGAGAAUCGCCAUUUGCUGGGAAACUGUUUUUCUAGCAAUUGUAAAUCGAG ..((((((.....((((((.........((((..((((.(((....)))))))..)))))))))).((((.....))))......)))))). ( -24.90) >consensus AUUCGAUUAAUCCCUUC_CGCAGUGGAAAGCACUUGGCAGAUGAGAAUCGC_AUUUGCUGGAAAGCUGUUUUUCCAGCAAUUGUAAAUCGAG .(((((((...........((((((.....))))..)).(((....))).....(((((((((((....))))))))))).....))))))) (-18.90 = -18.94 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:45 2006