Locus 5903

Sequence ID 2R_DroMel_CAF1
Location 18,627,776 – 18,627,869
Length 93
Max. P 0.500000
window9477

overview

Window 7

Location 18,627,776 – 18,627,869
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.78
Mean single sequence MFE -29.42
Consensus MFE -16.48
Energy contribution -16.48
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.56
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18627776 93 + 20766785
UCGAGUCAUGUGUGGCAGACAUGCAUAAUUCAAAACGUGGCUGGGAAACUCUGUUGCCCG-----------------UGUA---------UGUGUGU-CGCCACUUUUUAUGUUGGUAAC
.(.((.((((.(((((.((((((((((.......(((.(((.((....)).....)))))-----------------).))---------)))))))-))))))....)))))).).... ( -31.20)
>DroSim_CAF1 33062 95 + 1
UCGAGUCAUGUGUGGCAGACAUGCAUAAUUCAAAACGUGGCUGGGAAACUCUGUUGCCUG-----------------UGUG-----U--GUGUGUGU-CGCCACUUUUUAUGUUGGUAAC
.(.((.((((.(((((.((((((((((...((....(..((.((....))..))..)...-----------------))..-----)--))))))))-))))))....)))))).).... ( -31.80)
>DroEre_CAF1 40700 92 + 1
UCGAGUCAUGUGUGGCAGACAUGCAUAAUUCAAAACGUGGCUG-CAAACUCUUUUGCCUG-----------------UGUA-----UGUG----UGU-CGCCACUUUUUAUGUUGGUAAC
.(.((.((((.(((((.((((((((((.......(((.(((..-...........)))))-----------------).))-----))))----)))-))))))....)))))).).... ( -26.32)
>DroWil_CAF1 65895 88 + 1
GCGAGUCAUGUGUGGCAGACAUGCAUAAUUCAAAACGUGGCUGGGAAAAUGU-UUGC-UC-----------------GGCA-----UG-------GU-AGCCACUUUUUAUGCUGGUAAU
((((((.(((((((.....))))))).))))((((.(((((((.....((((-(...-..-----------------))))-----).-------.)-)))))).))))..))....... ( -25.00)
>DroYak_CAF1 37363 97 + 1
UCGAGUCAUGUGUGCCAGACAUGCAUAAUUCAAAACGUGGCUGGCAAACUCUGUUGCCUG-----------------UGUA-----UGUGUGUGUGU-UGCCACUUUUUAUGUUGGUAAC
..((((......((((((.((((............)))).)))))).)))).((((((.(-----------------..((-----.(((.((....-.)))))....))..).)))))) ( -26.10)
>DroAna_CAF1 43761 120 + 1
UCGAGUCAUGUGUGGCAGACAUGCAUAAUUCAAAACGUGGCUGGCAAAAUGUUUGUCCUGCAGAGUGUAUAUGUUUGUGUAUAGAGUGUGUGUGUGUUAGCCACUUUUUAUGCUGGUAAU
.(.((.((((.(((((.((((((((((((((...((...((.(((((.....)))))..))...))((((((....)))))).)))).)))))))))).)))))....)))))).).... ( -36.10)
>consensus
UCGAGUCAUGUGUGGCAGACAUGCAUAAUUCAAAACGUGGCUGGCAAACUCUGUUGCCUG_________________UGUA_____UG_GUGUGUGU_CGCCACUUUUUAUGUUGGUAAC
..((((.(((((((.....))))))).))))((((.(((((..........................................................))))).))))........... (-16.48 = -16.48 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:44 2006