Locus 59

Sequence ID 2R_DroMel_CAF1
Location 1,314,429 – 1,314,540
Length 111
Max. P 0.768131
window111

overview

Window 1

Location 1,314,429 – 1,314,540
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 87.39
Mean single sequence MFE -30.64
Consensus MFE -22.80
Energy contribution -23.80
Covariance contribution 1.00
Combinations/Pair 1.15
Mean z-score -1.85
Structure conservation index 0.74
SVM decision value 0.52
SVM RNA-class probability 0.768131
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1314429 111 - 20766785
CUCAUAACUAAAUGGGAAACUUACAUGCCCUCCAACGGCGCUUGUUCCCAUUUAUGUUUUUGCUGUGGCAGCAGCAUCAGCUCCGGCUUCUUUGGCCGACUGGCUUGUAAU
.....((((((((((((.....(((.((((......)).)).)))))))))))).)))..((((((....))))))..((((.(((((.....)))))...))))...... ( -35.10)
>DroSec_CAF1 32814 111 - 1
CUCAUAACUAAAUGGGAAACUUACAUGCCCUCCGACGGCGCUCGUUCCCAUUUCUGUUUUUGCUGUGGCAGCAGCAUCAGCUCCGGCUUCUUUGGCCGACUGGCUUGUAAU
.....(((.(((((((((.......((((.......))))....)))))))))..)))..((((((....))))))..((((.(((((.....)))))...))))...... ( -32.60)
>DroSim_CAF1 11753 107 - 1
CUCAUAACUAAAUGGGAAACUUACAUGCCCUCCGACGGCGCUCGUUCCCAUUUCUGUUUUUGCUGUGGCAGCAGCAUCAGCUCCGGCUUCUUUGGCCGAC----UUGUAAU
.........(((((((((.......((((.......))))....)))))))))..(((..((((((....))))))..)))..(((((.....)))))..----....... ( -31.20)
>DroYak_CAF1 2400 103 - 1
CUCAUAACUAAAUGGGA-ACUUACAUUCCCUAUAA---CGCUUGUUCUCGUUUCUGUUUUUGCUGUGGCAGCAACAUCAGCUUCGGCUUCC----UUGGCCUGCUUGUAAU
.....(((.((((((((-((...............---.....))))))))))..))).((((...((((((......(((....)))...----...).))))).)))). ( -23.65)
>consensus
CUCAUAACUAAAUGGGAAACUUACAUGCCCUCCAACGGCGCUCGUUCCCAUUUCUGUUUUUGCUGUGGCAGCAGCAUCAGCUCCGGCUUCUUUGGCCGACUGGCUUGUAAU
.........(((((((((.......((((.......))))....)))))))))..(((..((((((....))))))..)))..(((((.....)))))............. (-22.80 = -23.80 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:05 2006