Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,624,389 – 18,624,491 |
Length | 102 |
Max. P | 0.596458 |
Location | 18,624,389 – 18,624,491 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -31.36 |
Consensus MFE | -21.99 |
Energy contribution | -22.59 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.70 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18624389 102 + 20766785 AAAACUUUUGUCGAAGUUUGCGCUU----UUCUGGCC-CCAUAAGGCUGGGAAUAUGGUAAGCAGUACG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC ....(((((((.((....(((((((----((((((((-(..((..(((............)))..)).)------)))).))))))..)))))....)).)))))))...... ( -33.40) >DroSec_CAF1 35143 105 + 1 AAGACUUUUGUCGAAGUUUGCGCUUUU-UUUCUGGCC-CCAUAAGGCUGGCAAUAUGGUAAGCAGUUCG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAACC ....(((((((.((....(((((.(((-((..(((((-(......(((.((......)).))).....)------)))))..))))).)))))....)).)))))))...... ( -37.60) >DroSim_CAF1 29695 105 + 1 AAAACU-UUGUCGAAGUUUGCGCUUUUUUUUCUGACC-CCAUAAGGCUGGCAAUAUGGUAAGCAGUUCG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC .....(-((((.((....(((((...(((((((...(-((..(..(((.((......)).)))..)..)------))...))))))).)))))....)).)))))........ ( -27.10) >DroEre_CAF1 37319 102 + 1 AAAACUUUUAUCGAAGUUUGCGCUU----UUCUGGCC-CCAUAAGGCAGGGAGUAUGGUAAGCAAGACG------GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC .(((((((....)))))))..((((----((((.((.-..((((((((.(.....((((..(.....).------.)))).......).))).)))))..))...)))))))) ( -25.70) >DroYak_CAF1 33985 109 + 1 AAAACUUUUGUCGAAGUUUGCGCUU----UUCUGGCCCCCAUAAGGCAGGGAAUAUGGUAAGCAGGACGGCAGCAGGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC ....(((((((.((....(((((((----(((((((((((........)))..........((......))....)))).))))))..)))))....)).)))))))...... ( -33.00) >consensus AAAACUUUUGUCGAAGUUUGCGCUU____UUCUGGCC_CCAUAAGGCUGGGAAUAUGGUAAGCAGUACG______GGCCAAGAAAAAUGUGCACUUGUCAGCAGAAGAAAAGC ....(((((((.((....(((((......((((((((.(((((..........))))).................)))).))))....)))))....)).)))))))...... (-21.99 = -22.59 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:38 2006