| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,618,273 – 18,618,419 |
| Length | 146 |
| Max. P | 0.631876 |
| Location | 18,618,273 – 18,618,380 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.81 |
| Mean single sequence MFE | -13.72 |
| Consensus MFE | -10.44 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18618273 107 - 20766785 UAAAAUCCCAUCAUAAAAACACACGAAGCGCUG--CACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCACUUUUCUUUUCUUCUCAAUUUUUGCGCAUCUCGUU----------- ......................((((.(((((.--....)((((((((..((((....))))..)))))))).........................))))...)))).----------- ( -14.30) >DroSec_CAF1 29112 107 - 1 UAAAAUCCCAUCAUAAAAACACACGAAGCGUUG--CACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCUCUUUUCUUUUCUUCCCAAUUUUUCCGCAUCUCUUU----------- ........................((((.(.((--(..............((((....))))....(((((................))))).......))).).))))----------- ( -11.09) >DroYak_CAF1 27916 109 - 1 UAAAAUCCCAUCAUAAAAACACACGAAACGCUGCGCACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCACUUUUCUUUUCUUCUCAAUUUUUUCGCAUCUCUUU----------- .......................(((((.((...))....((((((((..((((....))))..)))))))).......................))))).........----------- ( -11.60) >DroAna_CAF1 34344 118 - 1 UAAAAUCCCAUCAUAAAAACACACGAAGCGCUG--CACAAAUCCAAAUACUGUGAAAAUACAACAUUUGGGUCACUUUUCUUUUCUUCCCGAUUCUGCCGCAGCUCCCCGACUAUACAUC .......................((..(.((((--(....((((((((..((((....))))..))))))))...........((.....)).......))))).)..)).......... ( -17.90) >consensus UAAAAUCCCAUCAUAAAAACACACGAAGCGCUG__CACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCACUUUUCUUUUCUUCCCAAUUUUUCCGCAUCUCUUU___________ ........................((((............((((((((..((((....))))..))))))))............))))................................ (-10.44 = -10.50 + 0.06)
| Location | 18,618,302 – 18,618,419 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.18 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -14.79 |
| Energy contribution | -14.23 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18618302 117 - 20766785 -CGAGCCAUUCAAUCGCUCCGCCAGACAAGCAAAUUUCGUUAAAAUCCCAUCAUAAAAACACACGAAGCGCUG--CACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCACUUUUC -.((((.........)))).....(((..(((..((((((......................))))))...))--)......((((((..((((....))))..)))))))))....... ( -19.45) >DroSec_CAF1 29141 117 - 1 -CGAGCCAUUCAAUCGCCCCGCCAGACAAGCAAAUUUCGUUAAAAUCCCAUCAUAAAAACACACGAAGCGUUG--CACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCUCUUUUC -......................((((..((((.((((((......................))))))..)))--)......((((((..((((....))))..))))))))))...... ( -17.55) >DroEre_CAF1 31314 117 - 1 -UGAGCCAUUCAAUCGCCCCGCCAGACAAGCAAAUUUCGUUAAAAUCCCAUCAUAAAAACACACGAAACGCUG--CACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCACUUUUC -.......................(((..(((..((((((......................))))))...))--)......((((((..((((....))))..)))))))))....... ( -16.25) >DroYak_CAF1 27945 119 - 1 -UAAGCCAUUCAAUCGCACCGCCAGACAAGCAAAUUUCGUUAAAAUCCCAUCAUAAAAACACACGAAACGCUGCGCACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCACUUUUC -.......................(((..(((..((((((......................))))))...)))........((((((..((((....))))..)))))))))....... ( -16.25) >DroAna_CAF1 34384 118 - 1 AGGAGGCAUUCAAUCGCCACGCCAGACAAGCAAAUUUCGUUAAAAUCCCAUCAUAAAAACACACGAAGCGCUG--CACAAAUCCAAAUACUGUGAAAAUACAACAUUUGGGUCACUUUUC .((.(((........)))...)).(((..(((..((((((......................))))))...))--)......((((((..((((....))))..)))))))))....... ( -21.35) >consensus _CGAGCCAUUCAAUCGCCCCGCCAGACAAGCAAAUUUCGUUAAAAUCCCAUCAUAAAAACACACGAAGCGCUG__CACAAAUCCAAAUACUGUAAAAAUACAACAUUUGGGUCACUUUUC ........................(((.(((...((((((......................)))))).)))..........((((((..((((....))))..)))))))))....... (-14.79 = -14.23 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:37 2006