Locus 5897

Sequence ID 2R_DroMel_CAF1
Location 18,617,992 – 18,618,100
Length 108
Max. P 0.920118
window9468

overview

Window 8

Location 18,617,992 – 18,618,100
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.65
Mean single sequence MFE -24.22
Consensus MFE -20.94
Energy contribution -20.94
Covariance contribution -0.00
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.86
SVM decision value 1.13
SVM RNA-class probability 0.920118
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18617992 108 - 20766785
CCU----ACCUACCUGUGCAAAAAGGCAAUUUGGAAGGGUGGAAACGUGAAA--------ACGUGGAAAAGCGAAGCCUGCAAUGGCCAUAUAUCAAAAGGCGAAAGAGUAAAGCACAUA
.((----((((.((..(((......)))....))..))))))..((((....--------))))......((...(((......)))..............(....)......))..... ( -24.20)
>DroSec_CAF1 28847 107 - 1
-CU----ACCUACCUGUGCAAAAAGGCAAUUUGGAAGGGUGGAAACGUGAAA--------ACGUGGAAAAGCGAAGCCUGCAAUGGCCAUAUAUCAAAAGGCGAAAGAGUAAAGCACAUA
-((----((((.((..(((......)))....))..))))))..((((....--------))))......((...(((......)))..............(....)......))..... ( -23.90)
>DroEre_CAF1 31031 95 - 1
---------CUACCUGUGCAAAAAGGCAAUUUGAAAAGGUGGA----------------AACGUGGAAAAGCGAAGCCUGCAAUGGCCAUAUAUCAAAAGGCGAAAGAGUAAAGCACAUA
---------.....(((((.....(((...(((...(((((..----------------..)((......))...)))).)))..))).............(....)......))))).. ( -22.60)
>DroYak_CAF1 27635 111 - 1
---------CUACCUGUGCAAAAAGGCAAUUUGGAAAGGUGGAAACGUGAAAACGUGGAAACGUGGAAAAGCGAAGCCUGCAAUGGCCAUAUAUCAAAAGGCGAAAGAGUAAAGCACAUA
---------.....(((((.....(((...(((...(((((....)((....((((....))))......))...)))).)))..))).............(....)......))))).. ( -27.50)
>DroAna_CAF1 33979 112 - 1
UGUAUGAAGUUACCUGUGGAAAAUGGCAAUUUGGAAAGGUGGAAACGUGGAA--------ACGUGGAAAAGCGAAGCCUGCGAUGGCCAUAUAUCAAAAGGCGAAAGAGUAAAGCACAUA
..((((......(((...((..(((((...(((...(((((....)......--------.(((......)))..)))).)))..)))))...))...)))(....).........)))) ( -22.90)
>consensus
__U____A_CUACCUGUGCAAAAAGGCAAUUUGGAAAGGUGGAAACGUGAAA________ACGUGGAAAAGCGAAGCCUGCAAUGGCCAUAUAUCAAAAGGCGAAAGAGUAAAGCACAUA
..............(((((.....(((...(((...(((((....)...............(((......)))..)))).)))..))).............(....)......))))).. (-20.94 = -20.94 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:35 2006