Locus 5896

Sequence ID 2R_DroMel_CAF1
Location 18,616,073 – 18,616,184
Length 111
Max. P 0.806844
window9467

overview

Window 7

Location 18,616,073 – 18,616,184
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.86
Mean single sequence MFE -36.16
Consensus MFE -31.16
Energy contribution -31.36
Covariance contribution 0.20
Combinations/Pair 1.15
Mean z-score -1.64
Structure conservation index 0.86
SVM decision value 0.63
SVM RNA-class probability 0.806844
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18616073 111 + 20766785
AAAGCCAAAUUGGGAUCAAGUUGUGGUUGGGCUUGGGUUCGAGUUGUCCUUGAGUUCUUGUCGGACAUGGCUUCUGUUCGAUUUCGAUGCUUUUGUGGUCAGUUGGCGAGU---------
...(((((....((((.((((..((.((.(((..(..((((((.....))))))..)..))).))))..))))..))))(((..(((.....)))..)))..)))))....--------- ( -35.10)
>DroSec_CAF1 26937 103 + 1
ACAGCCAAAUUGGGAUCAAGUUGUGGUUGGACUUGGGCUCGAGUUGUCCUUGAGUUCUUGUCGGACAUGGCUUCUGUUCGAUUUCGAUGCUUUUGUGGUCAG--------U---------
...((((.((((..(((((((..((.((.(((..(((((((((.....)))))))))..))).))))..))))......)))..)))).......))))...--------.--------- ( -34.20)
>DroEre_CAF1 29141 120 + 1
ACAGCCAAAUUGGGAUCAAGCUGUGGUUGGACUUGGGCUCGAGUUGUCCUUGAGUUCUGGUCGGACAUGGCUUCUGUUCGAUUUCGAUGCUUUUGUGGUCAGUGGGCGAGUGGCGAAUGU
...((((.((((..(((((((((((.((.((((.(((((((((.....))))))))).)))).))))))))))......)))..))))(((((((....))).))))...))))...... ( -43.20)
>DroYak_CAF1 25720 114 + 1
ACAGCCAAAUUGGGAUCAAGUUGUGGUUGGACUUGGGCUCGAGUUGUCCUUGAGUUCUUGUCGGACAUGGCUUCUGUUCGAUUUCGAUGCUUUUGUGGUCAAUGGGCAAGU------UGU
(((((...((((..(((((((..((.((.(((..(((((((((.....)))))))))..))).))))..))))......)))..))))(((((((....))).))))..))------))) ( -38.10)
>DroAna_CAF1 32224 104 + 1
ACAGCCAAAUAGGGAUCAAGUUGUGGUCGGAAUUCGGCUCGAGCUGUCCUCGAGUGCUUGUCGGACAUGGCUUCUGUUCGAUUUGGAUGCUUUUGUGGUCAGUG----------------
.((.((((((..((((.((((..((..(((......(((((((.....))))))).....)))..))..))))..)))).)))))).))...............---------------- ( -30.20)
>consensus
ACAGCCAAAUUGGGAUCAAGUUGUGGUUGGACUUGGGCUCGAGUUGUCCUUGAGUUCUUGUCGGACAUGGCUUCUGUUCGAUUUCGAUGCUUUUGUGGUCAGUGGGC_AGU_________
...((((.(((((((((((((..((.((.(((..(((((((((.....)))))))))..))).))))..))))......))))))))).......))))..................... (-31.16 = -31.36 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:34 2006