Locus 5893

Sequence ID 2R_DroMel_CAF1
Location 18,610,631 – 18,610,745
Length 114
Max. P 0.508163
window9463

overview

Window 3

Location 18,610,631 – 18,610,745
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 82.11
Mean single sequence MFE -39.97
Consensus MFE -23.86
Energy contribution -25.70
Covariance contribution 1.84
Combinations/Pair 1.22
Mean z-score -1.88
Structure conservation index 0.60
SVM decision value -0.05
SVM RNA-class probability 0.508163
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18610631 114 + 20766785
UAGAUCCAGCUGAUCUGCCAACGAGCAGCACUGAAUGGAGUAAACUCCACCUCGCCGAUUGCGAAUGGAGCAGAUGCAUUCAGCUUGGCGCACCAAGCAUCGCAGAUCUUGGAG
....(((((..(((((((....(((..((((((..(((((....)))))((((((.....))))..))..))).))).))).((((((....))))))...)))))))))))). ( -43.30)
>DroSec_CAF1 20223 114 + 1
UAGAUCCAGCUGAUCUGCCAACGAGCAGCACUGAAUGGAGUAAACUCCACCUCGCCGAUUGCGAAUGGAGCAGGUGCAUUCAGCUUGGCGCACCAAGCAUCGCAGAUCUUGGAG
....(((((..(((((((....(((..(((((...(((((....)))))((((((.....))))..))....))))).))).((((((....))))))...)))))))))))). ( -44.20)
>DroSim_CAF1 21031 114 + 1
UAGAUCUAGCUGAUCUGCCAACGAGCAGCACUUAAUCGAGUAAACUCCCCCUCGCCGAUUGCGAAUGGAGCAGGUGCAUUCAGCUUGGUGCACCAAGCAUCGCAGAUCUUGGAG
....(((((..(((((((....(((..((((((....(((....)))((..((((.....))))..))...)))))).))).((((((....))))))...)))))))))))). ( -39.90)
>DroEre_CAF1 23660 114 + 1
UAGGUCCAGUUGAUCUGCCAAGGAGCAGCAUUGAAUGGAGUAGACUCCACCGCGACGAUUGCGAAUGCAGCAGGCGCAUUCAGCCUCGCGGACCAAGCAUCGCAGAUCCUGGAG
....(((((..(((((((...(..((.........(((((....)))))((((((.....((((((((.......)))))).)).)))))).....))..))))))))))))). ( -43.90)
>DroYak_CAF1 20305 114 + 1
CAGAUCCAGCUGAUCUGCCAGCGAGCAGCAUUUAAUGGAGUAAACUCCACCGCGACGAUUGCGCAUGGAGCAGGUGCAUUCAGCCUCGCGGACCAAGCAUCGCAGAUCUUGGAG
....(((((..(((((((..((.............(((((....)))))((((((.((.(((((.((...)).))))).))....)))))).....))...)))))))))))). ( -41.50)
>DroAna_CAF1 24518 114 + 1
CAUAUCCACUUGGUCGGCCAGGGAGCAACAUUUUGUGGCAAAAACCCCGCCCCGACGAUUGCGAAUCCGGCAAACCGAUUCAGCUUCCCGCAUCAGGUCCUUCAGCUCCUUUCG
.......(((((((..((..((((((......(((.(((.........))).))).......(((((.((....))))))).)))))).)))))))))................ ( -27.00)
>consensus
UAGAUCCAGCUGAUCUGCCAACGAGCAGCACUGAAUGGAGUAAACUCCACCUCGACGAUUGCGAAUGGAGCAGGUGCAUUCAGCUUCGCGCACCAAGCAUCGCAGAUCUUGGAG
....(((((..(((((((...(((((.........(((((....))))).......((.((((..((...))..)))).)).)))))((.......))...)))))))))))). (-23.86 = -25.70 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:30 2006