| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,606,151 – 18,606,248 |
| Length | 97 |
| Max. P | 0.752302 |
| Location | 18,606,151 – 18,606,248 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.22 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -21.28 |
| Energy contribution | -21.68 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18606151 97 + 20766785 UCU-GUGCCCC--AUUUACAGCCCGC---CCGGU-----GCC-----------CCCGCGAUGGGGCACCGGAUGCUCUAAUUGCAUCUGAUUGCAGUGACAGUUU-UUCCACCAACUGAC .((-(((....--...)))))...((---(((((-----(((-----------((......))))))))))..))....((((((......))))))..(((((.-.......))))).. ( -35.50) >DroSec_CAF1 15735 115 + 1 UCU-GUGCCCC--AUUUCCAGCCCACAGCCCACUCCCUUGCCACGGCCCUU-UUCCGCGAUGGGGCACCGGAAGCUCUAAUUGCAUCUGAUUGCAGUGACAGUUU-UUCCACCAAGUGAC ...-(((((((--(((.(..((.....))..........((....))....-....).)))))))))).(((((..((.((((((......))))))...))..)-)))).......... ( -32.40) >DroSim_CAF1 16351 116 + 1 UCU-GUGCCCC--ACUUCCAGCCCACAGCCCACUCCCUUGCCACGGCCCUUUUUCCGCGAUGGGGCACCGGAAGCUCUAAUUGCAUCUGAUUGCAGUGACAGUUU-UUCCACCAACUGAC ...-(((((((--(......((.....))............(.(((........))).).)))))))).(((((..((.((((((......))))))...))..)-)))).......... ( -31.20) >DroEre_CAF1 15742 109 + 1 UUGUGUGCCCC--AUUUCCAC------GCCAACUCCCCUGCCCCGCCCC-U-UUCCGCGAUGGGGCACCGGAAGCUCUAAUUGCAUCUGAUUGCAGUGACAGUUU-UUCCAACAACUGAC (((((((((((--((......------((..........))..(((...-.-....)))))))))))).(((((..((.((((((......))))))...))..)-)))).))))..... ( -32.20) >DroYak_CAF1 15677 112 + 1 UCGU-UGCCCCUGAUUUCCAC------GCCAACUCGCUUGCCACGCCCCAU-UUUCGCGAUGGGGCACCGGAAGCUCUAAUUGCAUCUGAUUGCAGUGACAGUUUUUUCCACCAACUGAC ..((-((....((.....)).------..))))(((((.((...(((((((-(.....))))))))..((((.((.......)).))))...)))))))(((((.........))))).. ( -30.30) >consensus UCU_GUGCCCC__AUUUCCAGCCC_C_GCCCACUCCCUUGCCACGCCCC_U_UUCCGCGAUGGGGCACCGGAAGCUCUAAUUGCAUCUGAUUGCAGUGACAGUUU_UUCCACCAACUGAC ....(((((((..................................................))))))).(((((((...((((((......))))))...)))...)))).......... (-21.28 = -21.68 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:24 2006