| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,605,377 – 18,605,487 |
| Length | 110 |
| Max. P | 0.629127 |
| Location | 18,605,377 – 18,605,487 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -11.55 |
| Energy contribution | -11.55 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18605377 110 - 20766785 UUGUUGCGGCUCAGCAAAAAUG-AAAUGUUU--GGCAUAAAAAAUGCAUAAAUUAUGCAAACCAUUUAAGGGGCAAACAAGAAGGAAAAAUCGAAAAUGCCUCAACAUUUUUG .(((((.((((((.......))-)..(((((--(.(........((((((...))))))..((......))).))))))...................))).)))))...... ( -24.60) >DroPse_CAF1 20511 89 - 1 ----------CCAGAAAAAACGCAAAUGUUU--GGCAUAAAAAAUGCAUGAAUUAUGCAAACCAUUUA------------GAAGGGAAAAUCGAAAAUUCCUCAACAUUUUUU ----------...((((((..(((...((((--(((((.....)))).)))))..)))..........------------...(((((.........))))).....)))))) ( -10.80) >DroSec_CAF1 14959 110 - 1 UUGUUGCGGCGCAGCAAAAAUG-AAAUGUUU--GGCAUAAAAAAUGCAUAAAUUAUGCAAACCAUUUAAGGGGCAAACAAGAAGGAAAAAUCGAAAAUGCCUCAACAUUUUUG ..(((((...)))))(((((((-(((((...--.((((((............))))))....)))))..((((((.....((........)).....))))))..))))))). ( -25.00) >DroYak_CAF1 14917 109 - 1 UUGUUGCGGCUGAGCAGAAAUG-AAAUGUUU--GGCAUAAAAAAUGCAUAAAUUAUGCAAACCAUUUAAGGGGCAAACAAGAAG-AAAAAUCGAAAAUGCCUCAACAUUUUUG .(((((.(((....((....))-...(((((--(.(........((((((...))))))..((......))).)))))).....-.............))).)))))...... ( -25.40) >DroAna_CAF1 19880 105 - 1 -------AGCUCAACAAAAUUC-AAAUGUUUUCGGCAUAAAAAAUGCAUAAAUUAUGCAAACCAUUUAAGAGGCAAACAAGGAGGAAAAAUCGAAAAUGCCUCAGCAUUUCUG -------.(((...........-(((((......((((((............))))))....)))))..((((((......((.......)).....)))))))))....... ( -17.20) >DroPer_CAF1 20484 89 - 1 ----------CCAGAAAAAACGCCAAUGUUU--GGCAUAAAAAAUGCAUGAAUUAUGCAAACCAUUUA------------GAAGGGAAAAUCGAAAAUUCCUCAACAUUUUUU ----------...((((((..((((.....)--)))........((((((...)))))).........------------...(((((.........))))).....)))))) ( -12.40) >consensus _______GGCUCAGCAAAAAUG_AAAUGUUU__GGCAUAAAAAAUGCAUAAAUUAUGCAAACCAUUUAAGGGGCAAACAAGAAGGAAAAAUCGAAAAUGCCUCAACAUUUUUG .......................(((((((...(((((......((((((...)))))).....................((........))....)))))..)))))))... (-11.55 = -11.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:23 2006