Locus 589

Sequence ID 2R_DroMel_CAF1
Location 3,006,199 – 3,006,290
Length 91
Max. P 0.794474
window1067

overview

Window 7

Location 3,006,199 – 3,006,290
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 77.36
Mean single sequence MFE -31.15
Consensus MFE -18.85
Energy contribution -20.05
Covariance contribution 1.20
Combinations/Pair 1.21
Mean z-score -1.69
Structure conservation index 0.61
SVM decision value 0.60
SVM RNA-class probability 0.794474
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3006199 91 - 20766785
GGUAGGUAAUCCUUCCGGGGGGAACCGAAAGCGAUGCUCAUCCGCAUCUCUGCCCCUGGAGGACGAGGACAACAACGUCGAGGAAGAACCC
....(((..((((((((((((....(....).(((((......)))))....)))))))).((((..(....)..)))).))))...))). ( -33.50)
>DroSec_CAF1 10487 91 - 1
GGUAGGUAAUCCUUCCGGAGGAAACAGAAAGCGGUGCACGUCCGUAUCCCUGCCCCUGGAGGACGAAGACAACAACGUCGAGGAACAACCC
....(((..(((((((((.((...(((...((((.......))))....))).))))))).((((..(....)..)))).))))...))). ( -24.10)
>DroSim_CAF1 10368 91 - 1
GGUAGGUAAUCCUUCCGGGGGAAACAGAAGGCGGUGCACGUCCGCAUCCCUGCCCCUGGAGGACGAAGACAACAACGUCGAGGAACAACCC
....(((..((((((((((((.......(((.(((((......)))))))).)))))))).((((..(....)..)))).))))...))). ( -34.90)
>DroEre_CAF1 10526 91 - 1
UGCAGGUAAUCCAACCGGGGGAAACCGAAAGCGGUGUACGUCCGCAUCUGUGCCCCUGGAAGAUGAGGACAACAACAUCGAGGAAGAACCG
....(((..(((..(((((((..((.((..((((.......)))).)).)).)))))))..((((..(....)..))))..)))...))). ( -31.20)
>DroYak_CAF1 9923 91 - 1
AGCUGGUAAUCCUACCGGGGGAAACCGAAAGCGUUGUACGUCCGCGUCUUUGCCCCUGGAAGACGAGGACAACAACAUCGAGGAUGAACAC
...((...(((((..(((((....))......(((((..((((.(((((((.......))))))).)))).))))).))))))))...)). ( -32.10)
>DroAna_CAF1 11022 88 - 1
GGCAGGAACAGUUGCCGGAAGCAGUCGAAAGCGGGGCUUGUCUGCAUCGAUUGCUCAAGAUGAUGAGGAGA---UCAUCGAGGAGGAGCCA
(((((......)))))((..((((((((..(((((.....))))).))))))))((..((((((......)---)))))...))....)). ( -31.10)
>consensus
GGCAGGUAAUCCUUCCGGGGGAAACCGAAAGCGGUGCACGUCCGCAUCUCUGCCCCUGGAGGACGAGGACAACAACAUCGAGGAAGAACCC
....(((..((((.(((((((.....((..((((.......)))).))....)))))))..((((..........)))).))))...))). (-18.85 = -20.05 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:14 2006