Locus 5889

Sequence ID 2R_DroMel_CAF1
Location 18,600,258 – 18,600,351
Length 93
Max. P 0.707591
window9455

overview

Window 5

Location 18,600,258 – 18,600,351
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 84.70
Mean single sequence MFE -23.12
Consensus MFE -21.84
Energy contribution -21.37
Covariance contribution -0.47
Combinations/Pair 1.09
Mean z-score -1.36
Structure conservation index 0.94
SVM decision value 0.37
SVM RNA-class probability 0.707591
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18600258 93 + 20766785
AUCAUGUCAGCUUUGAUUACGUUUUGUCAUGUUGACAAUGUUGAAGUGUUGUCGGCUCGGAAAUGUUUCCUCUGCCACGGAUAGAAA-UCCAAA-----------
....(((((((..((((........)))).))))))).............((.(((..((((....))))...)))))((((....)-)))...----------- ( -23.90)
>DroSec_CAF1 9831 94 + 1
AUCAUGUCAGCUUUGAUUACGUUUUGUCAUGUUGACAAUGUUGAAGUGUUGUCGGCUCGGAAAUGUUUCCUCUGCCACGGAAAAAAAAUCCCAA-----------
....(((((((..((((........)))).))))))).............((.(((..((((....))))...)))))(((.......)))...----------- ( -21.40)
>DroSim_CAF1 10538 94 + 1
AUCAUGUCAGCUUUGAUUACGUUUUGUCAUGUUGACAAUGUUGAAGUGUUGUCGGCUCGGAAAUGUUUCCUCUGCCACGGAAAAAAAUCCCAAA-----------
....(((((((..((((........)))).)))))))...(((.......((.(((..((((....))))...)))))(((......)))))).----------- ( -22.20)
>DroEre_CAF1 9989 101 + 1
AUCAUGUCAGCUUUGAUUACGUUUUGUCAUGUUGACAAUGUUGAAGUGUUGUCGGCUCGGAAAUGUUUCCUCUGCCACAAAAAAA----CCAAAAAACGACCAGC
....(((((((..((((........)))).))))))).((((...((.((((.(((..((((....))))...)))))))....)----).....))))...... ( -23.40)
>DroYak_CAF1 9985 85 + 1
AUCAUGUCAGCUUUGAUUACGUUUUGUCAUGUUGACAUU--------GUUGUCGGCUCGGAAAUGUUUCCUCUGCCACGAAAAAA----CUAAAAAA--------
...((((((((..((((........)))).)))))))).--------.((((.(((..((((....))))...))))))).....----........-------- ( -22.10)
>DroPer_CAF1 15592 101 + 1
AUCAUGUCAGCUUUGAUUACGUUUUGUCAUGUUGACAAUGUUGAAGUGUUGUCGGCUCGGAAAUGUUUCCUCUGCCACAAAAAAA----GAAAGAGAACACCAUC
....(((((((..((((........)))).)))))))........(((((.(((((..((((....))))...))).(.......----)...)).))))).... ( -25.70)
>consensus
AUCAUGUCAGCUUUGAUUACGUUUUGUCAUGUUGACAAUGUUGAAGUGUUGUCGGCUCGGAAAUGUUUCCUCUGCCACGAAAAAA____CCAAA___________
....(((((((..((((........)))).)))))))...........((((.(((..((((....))))...)))))))......................... (-21.84 = -21.37 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:22 2006