| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,599,760 – 18,599,854 |
| Length | 94 |
| Max. P | 0.890247 |
| Location | 18,599,760 – 18,599,854 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 77.45 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -15.64 |
| Energy contribution | -15.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18599760 94 + 20766785 AGGGAAACCUCAAUCAGAUUUUCAGAGCGGCAACGGCA---AGGGGUGAAGAAUGACUGAGCAGUUGCACUGUGAGAAAUCAAUGGGGGUUGGGGCA .......((((((((.((((((((.((..(((((.((.---((..((.....))..))..)).))))).)).)))).))))......)))))))).. ( -27.60) >DroSec_CAF1 9340 87 + 1 AGGGAAACCUCAAUCAGAUUUUCAGAGCGACGACGGCA---AGGGGUGAAGAAUGACUGAGCAGUUGCACUGCGAGAAAUCGAUGGAGG-------A .......((((.(((.(((((((((.(((((....((.---((..((.....))..))..)).))))).)))...))))))))).))))-------. ( -25.70) >DroSim_CAF1 10077 87 + 1 AGGGAAACCUCAAUCAGAUUUUCACAGCGGCGAUGGCA---AGGGGUGAAGAAUGACUGAGCAGUUGCACUGCGAGAAAUCGAUGGAGG-------A .......((((.(((.(((((((.(((..(((((.((.---((..((.....))..))..)).))))).))).))).))))))).))))-------. ( -26.10) >DroEre_CAF1 9502 94 + 1 AGGGAAACCUCAAUCAGAUUUCUACAGCGGCAACGGCA---AGGGGUGAAGAAUGACUGAGCAGUUGCACUGCGAGAAAUCGGGGGCGGUUGGGUAA .((....))((((((((....))...((.(((((.((.---((..((.....))..))..)).))))).((.(((....))).)))))))))).... ( -29.70) >DroYak_CAF1 9532 89 + 1 AGGGAAACCUCAAUCAGAUUUCUACAGCGGCAAUGGCA---AGGGGUGAAGAGUU-----GCAGUUGCACUGCGAGAAAUCGGUGGCGGUUGGGUUA .((....))((((((.(((((((...((.(((((.(((---(...........))-----)).)))))...)).)))))))(....))))))).... ( -26.50) >DroAna_CAF1 14768 91 + 1 AGGGAAACCUCAAUCAGAUUUGUGCAACGGCAGCCGCAGAAAGGGGC-AGUUGUU--ACGGCGGAUGCACAGUGGAAAAAUGCUGGGAGU---GCCA (((....))).............(.((((((.(((.(.....).)))-.))))))--.)((((..(.(.(((((......)))))).).)---))). ( -26.30) >consensus AGGGAAACCUCAAUCAGAUUUUCACAGCGGCAACGGCA___AGGGGUGAAGAAUGACUGAGCAGUUGCACUGCGAGAAAUCGAUGGAGGU___G__A (((....)))......((((((....((.(((((.((.......................)).)))))...))..))))))................ (-15.64 = -15.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:21 2006